Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0048961 unnamed protein product [Coffea canephora] Chr1 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G15300 LG-1 + View
Acer truncatum Atru.chr3.560 chr3 - View
Actinidia chinensis Actinidia19177 Lachesis_group8 - View
Arabidopsis lyrata AL5G30830 scaffold_5 - View
Aquilegia oxysepala Aqoxy5G01657 CHR05 - View
Arabidopsis thaliana AT3G50670 U1 small nuclear ribonucleoprotein-70K Encodes U1 snRNP 70K U1 small nuclear ribonucleoprotein-70K (U1-70K)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal (InterPro:IPR022023)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G43370.1)%3B Has 287 Blast hits to 284 proteins in 72 species: Archae - 6%3B Bacteria - 66%3B Metazoa - 0%3B Fungi - 0%3B Plants - 156%3B Viruses - 0%3B Other Eukaryotes - 59 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC04g23156 ChrC04 + View
Brassica carinata BcaC06g34739 ChrC06 + View
Brassica napus C07p25050 C07 - View
Brassica napus A07p17190 A07 - View
Brassica oleracea BolC9t54053H C9 - View
Beta vulgaris EL10Ac6g14938 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Chr6_EL10_PGA_scaffold0 + View
Capsicum annuum CAN.G358.106 PGAv.1.6.scaffold358 - View
Cannabis sativa CANSAT01G3054 NC_044373.1 + View
Cicer arietinum L. Ca_22260_v3 Ca_LG7_v3 + View
Corylus avellana Haze_15104 Similar to RNU1: U1 small nuclear ribonucleoprotein 70 kDa (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc07_g09390 Putative RNA-binding (RRM/RBD/RNP motifs) family protein chr7 + View
Citrus clementina Ciclev10025502m.g scaffold_7 - View
Cardamine hirsuta CARHR280960 U1 small nuclear ribonucleoprotein 70 kDa, putative Chr8 - View
Carya illinoinensis CiPaw.01G036600 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Chr01 + View
Carya illinoinensis CiPaw.02G016400 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Chr02 + View
Citrullus lanatus ClCG01G019460 U1 small nuclear ribonucleoprotein 70 kDa, putative CG_Chr01 + View
Cucumis melo MELO3C007821.2 U1 small nuclear ribonucleoprotein 70 kDa chr08 + View
Chenopodium quinoa AUR62007983 RNU1: U1 small nuclear ribonucleoprotein 70 kDa C_Quinoa_Scaffold_2646 - View
Chenopodium quinoa AUR62003163 RNU1: U1 small nuclear ribonucleoprotein 70 kDa C_Quinoa_Scaffold_1000 - View
Capsella rubella Carub.0005s1700 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) scaffold_5 - View
Cucumis sativus L. CsaV3_6G046180 U1 small nuclear ribonucleoprotein 70 kDa chr6 + View
Daucus carota DCAR_017262 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv26824 GWHABJS00000021 - View
Davidia involucrata Dinv39972 GWHABJS00000014 - View
Durio zibethinus Duzib264G0087 NW_019167960.1 + View
Durio zibethinus Duzib187G1223 NW_019167860.1 + View
Erigeron canadensis ECA238G3955 Conyza_canadensis_scaffold:6 - View
Erythranthe guttata Migut.H01001 scaffold_8 - View
Eutrema salsugineum Thhalv10010375m.g K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) scaffold_16 + View
Eutrema salsugineum Thhalv10004249m.g K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) scaffold_6 + View
Fragaria x ananassa FAN19G0426 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Fvb1-4 - View
Fragaria x ananassa FAN28G1132 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Fvb1-1 + View
Fragaria x ananassa FAN23G0698 PF00076//PF12220 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // U1 small nuclear ribonucleoprotein of 70kDa MW N terminal (U1snRNP70_N) Fvb1-3 + View
Fragaria x ananassa FAN26G3322 PTHR13952:SF5 - U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA Fvb1-2 - View
Fragaria vesca FvH4_1g13450 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Fvb1 - View
Gossypium hirsutum Gohir.D10G092700 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) D10 + View
Glycine max Glyma.11G067300 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Gm11 + View
Glycine max Glyma.02G057600 Gm02 - View
Glycine max Glyma.01G175100 PTHR13952//PTHR13952:SF5 - U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD // U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA Gm01 + View
Gossypium raimondii Gorai.011G101900 Chr11 + View
Lupinus albus Lalb_Chr05g0212861 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Lalb_Chr05 - View
Lupinus albus Lalb_Chr09g0333571 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Lalb_Chr09 - View
Lotus japonicus Lj4g0010267 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) chr4 - View
Lonicera japonica Lj4A199T81 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_2_76601 Lsat_1_v8_lg_2 - View
Magnolia biondii MBI16_g37699_MAGBIO AED:0.29 Chr16 + View
Malus domestica MD02G1149700 U1 small nuclear ribonucleoprotein-70K Chr02 - View
Malus domestica MD15G1264300 U1 small nuclear ribonucleoprotein-70K Chr15 - View
Manihot esculenta Manes.01G134400 Chromosome01 + View
Manihot esculenta Manes.02G092600 Chromosome02 + View
Medicago truncatula Medtr8g077840 U1 small nuclear ribonucleoprotein 70 kDa protein, putative chr8 - View
Nelumbo nucifera Nn1g05031 chr1 - View
Nicotiana tabacum Nitab4.5_0000434g0070 RNA recognition motif domain, U1 small nuclear ribonucleoprotein of 70kDa N-terminal, Nucleotide-binding, alpha-beta plait Nitab4.5_0000434 + View
Petunia axillaris Peaxi162Scf00515g00430 U1 small nuclear ribonucleoprotein 70 kDa Peaxi162Scf00515 + View
Punica granatum PGR102G2748 NC_045129.1 - View
Prunus persica Prupe.7G153200 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Pp07 + View
Pisum sativum Psat4g092040 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal chr4LG4 + View
Papaver somniferum PSO675G8944 NC_039358.1 + View
Papaver somniferum PSO541G4083 NC_039363.1 - View
Populus trichocarpa Potri.007G026900 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Chr07 - View
Populus trichocarpa Potri.005G124300 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Chr05 - View
Phaseolus vulgaris Phvul.002G029300 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) Chr02 + View
Quercus lobata QL06p045737 6 + View
Rosa chinensis RcHm_v2.0_Chr2g0101831 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim08G0114500 chr08 + View
Striga asiatica SGA_v2.0_scaffold276G46638 scaffold276 - View
Salix brachista Sabra05G0102100 GWHAAZH00000005 - View
Salix brachista Sabra07G0023600 GWHAAZH00000007 - View
Simmondsia chinensis Sc16g0000910 GWHAASQ00000016 - View
Sechium edule Sed0005805 LG10 + View
Sechium edule Sed0017755 LG14 + View
Solanum lycopersicum Solyc02g085420.4 U1 small nuclear ribonucleoprotein 70 kDa (AHRD V3.3 *-* A0A2G3AAH2_CAPAN) SL4.0ch02 - View
Schrenkiella parvula Sp2g29940 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) ch2-4 - View
Schrenkiella parvula Sp5g11550 K11093 - U1 small nuclear ribonucleoprotein 70kDa (SNRP70) ch5-1 + View
Solanum pennellii Sopen02g030100 Encodes U1 snRNP 70K | U1 small nuclear ribonucleoprotein-70K (U1-70K) | FUNCTIONS IN: RNA binding, nucleotide binding | INVOLVED IN: nuclear mRNA splicing, via spliceosome | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400014893 U1 small nuclear ribonucleoprotein 70 kDa ST4.03ch02 + View
Selenicereus undatus Hund14148 Scaffold_33679 + View
Trochodendron aralioides TAR376G1008 group14 + View
Trochodendron aralioides TAR628G1004 group5 + View
Theobroma cacao Thecc.01G037400 U1 small nuclear ribonucleoprotein 70 kDa Chromosome_1 - View
Trifolium pratense TPR.G34973 Tp57577_TGAC_v2_LG4 - View
Tripterygium wilfordii TWI73G1158 NC_052232.1 + View
Tripterygium wilfordii TWI09G1640 NC_052245.1 - View
Vaccinium macrocarpon vmacro17845 Similar to RNU1: U1 small nuclear ribonucleoprotein 70 kDa (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G2053 CM024074.1 + View
Vitis vinifera GSVIVG01018981001 chr4 + View