Functional clusters

Information

  • Type Gene Ontology
  • Description organelle lumen

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB05 3 CH_bca_725 12 72 0.000242567
Carpinus fangiana Cfa01 3 CH_cfa_249 8 24 0.000192194
Gossypium hirsutum A08 3 CH_ghi_441 14 77 0.000116933
Pisum sativum chr4LG4 3 CH_psa_367 10 55 0.000682751
Populus trichocarpa Chr10 3 CH_ptr_406 12 58 0.000385695
Quercus lobata 8 3 CH_qlo_652 14 80 0.0000165433
Brassica carinata ChrB05 4 CH_bca_725 12 72 0.000242567
Carpinus fangiana Cfa01 4 CH_cfa_249 8 24 0.000192194
Gossypium hirsutum A08 4 CH_ghi_441 14 77 0.000116933
Pisum sativum chr4LG4 4 CH_psa_367 10 55 0.000682751
Populus trichocarpa Chr10 4 CH_ptr_406 12 58 0.000385695
Quercus lobata 8 4 CH_qlo_652 14 80 0.0000165433

Available child term results

Ontology identifier Description Number of clusters
GO:0000118 histone deacetylase complex 4
GO:0000123 histone acetyltransferase complex 2
GO:0000124 SAGA complex 10
GO:0000176 nuclear exosome (RNase complex) 2
GO:0000795 synaptonemal complex 4
GO:0000802 transverse filament 20
GO:0000811 GINS complex 8
GO:0000812 Swr1 complex 4
GO:0005641 nuclear envelope lumen 2
GO:0005652 nuclear lamina 8
GO:0005654 nucleoplasm 2
GO:0005655 nucleolar ribonuclease P complex 30
GO:0005656 nuclear pre-replicative complex 2
GO:0005662 DNA replication factor A complex 4
GO:0005664 nuclear origin of replication recognition complex 16
GO:0005665 RNA polymerase II, core complex 2
GO:0005669 transcription factor TFIID complex 28
GO:0005672 transcription factor TFIIA complex 8
GO:0005673 transcription factor TFIIE complex 8
GO:0005674 transcription factor TFIIF complex 10
GO:0005712 chiasma 4
GO:0005730 nucleolus 14
GO:0005736 RNA polymerase I complex 2
GO:0005758 mitochondrial intermembrane space 2
GO:0005759 mitochondrial matrix 30
GO:0005761 mitochondrial ribosome 2
GO:0005762 mitochondrial large ribosomal subunit 8
GO:0005763 mitochondrial small ribosomal subunit 14
GO:0005775 vacuolar lumen 8
GO:0005782 peroxisomal matrix 4
GO:0005796 Golgi lumen 2
GO:0008622 epsilon DNA polymerase complex 38
GO:0015030 Cajal body 2
GO:0016363 nuclear matrix 6
GO:0016591 RNA polymerase II, holoenzyme 2
GO:0016593 Cdc73/Paf1 complex 6
GO:0016604 nuclear body 6
GO:0016607 nuclear speck 8
GO:0030875 rDNA protrusion 2
GO:0030896 checkpoint clamp complex 20
GO:0031011 Ino80 complex 18
GO:0031972 chloroplast intermembrane space 4
GO:0032777 Piccolo NuA4 histone acetyltransferase complex 24
GO:0032783 super elongation complex 6
GO:0034457 Mpp10 complex 24
GO:0035061 interchromatin granule 6
GO:0035098 ESC/E(Z) complex 2
GO:0035101 FACT complex 74
GO:0035267 NuA4 histone acetyltransferase complex 14
GO:0043601 nuclear replisome 2
GO:0043625 delta DNA polymerase complex 10
GO:0046695 SLIK (SAGA-like) complex 8
GO:0048188 Set1C/COMPASS complex 6
GO:0070449 elongin complex 16
GO:0070461 SAGA-type complex 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001