Functional clusters

Information

  • Type Gene Ontology
  • Description phosphorus metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corylus avellana 1 3 CH_cav_149 15 29 0.00000201176
Eucalyptus grandis Chr03 3 CH_egr_577 12 16 0.00000543758
Erythranthe guttata scaffold_5 3 CH_egut_210 24 79 0.00000450043
Fragaria x ananassa Fvb7-2 3 CH_fan_562 7 8 0.000970451
Fragaria vesca Fvb6 3 CH_fve_394 11 26 0.000901637
Glycine max Gm08 3 CH_gma_406 15 37 0.00025433
Helianthus annuus HanXRQChr03 3 CH_han_417 19 51 0.0000244681
Oryza sativa ssp. japonica chr02 3 CH_osa_264 22 70 0.0000365262
Punica granatum NC_045127.1 3 CH_pgr_135 20 43 0.0000000880294
Populus trichocarpa Chr04 3 CH_ptr_292 10 13 0.0000386937
Salvia bowleyana GWHASIU00000004 3 CH_sbo_439 14 52 0.000375641
Simmondsia chinensis GWHAASQ00000014 3 CH_sci_226 18 62 0.000265419
Sequoiadendron giganteum chr1 3 CH_sgi_1044 20 72 0.000086699
Sequoiadendron giganteum chr6 3 CH_sgi_300 27 67 0.00000000000391798
Sequoiadendron giganteum chr10 3 CH_sgi_742 12 19 0.00000160869
Solanum lycopersicum SL4.0ch02 3 CH_sly_378 9 11 0.0000942117
Vigna mungo CM024079.1 3 CH_vmu_264 15 42 0.000348698
Corylus avellana 1 4 CH_cav_149 15 29 0.00000201176
Eucalyptus grandis Chr03 4 CH_egr_577 12 16 0.00000543758
Erythranthe guttata scaffold_5 4 CH_egut_210 24 79 0.00000450043
Fragaria x ananassa Fvb7-2 4 CH_fan_562 7 8 0.000970451
Fragaria vesca Fvb6 4 CH_fve_394 11 26 0.000901637
Glycine max Gm08 4 CH_gma_406 15 37 0.00025433
Helianthus annuus HanXRQChr03 4 CH_han_417 19 51 0.0000244681
Oryza sativa ssp. japonica chr02 4 CH_osa_264 22 70 0.0000365262
Punica granatum NC_045127.1 4 CH_pgr_135 20 43 0.0000000880294
Populus trichocarpa Chr04 4 CH_ptr_292 10 13 0.0000386937
Salvia bowleyana GWHASIU00000004 4 CH_sbo_439 14 52 0.000375641
Simmondsia chinensis GWHAASQ00000014 4 CH_sci_226 18 62 0.000265419
Sequoiadendron giganteum chr1 4 CH_sgi_1044 20 72 0.000086699
Sequoiadendron giganteum chr6 4 CH_sgi_300 27 67 0.00000000000391798
Sequoiadendron giganteum chr10 4 CH_sgi_742 12 19 0.00000160869
Solanum lycopersicum SL4.0ch02 4 CH_sly_378 9 11 0.0000942117
Vigna mungo CM024079.1 4 CH_vmu_264 15 42 0.000348698

Available child term results

Ontology identifier Description Number of clusters
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 14
GO:0006002 fructose 6-phosphate metabolic process 8
GO:0006003 fructose 2,6-bisphosphate metabolic process 16
GO:0006065 UDP-glucuronate biosynthetic process 2
GO:0006085 acetyl-CoA biosynthetic process 2
GO:0006096 glycolytic process 20
GO:0006104 succinyl-CoA metabolic process 6
GO:0006110 regulation of glycolytic process 2
GO:0006167 AMP biosynthetic process 8
GO:0006176 dATP biosynthetic process from ADP 4
GO:0006182 cGMP biosynthetic process 6
GO:0006183 GTP biosynthetic process 4
GO:0006189 'de novo' IMP biosynthetic process 4
GO:0006226 dUMP biosynthetic process 6
GO:0006228 UTP biosynthetic process 2
GO:0006231 dTMP biosynthetic process 2
GO:0006233 dTDP biosynthetic process 4
GO:0006468 protein phosphorylation 824
GO:0006470 protein dephosphorylation 2
GO:0006506 GPI anchor biosynthetic process 14
GO:0006644 phospholipid metabolic process 2
GO:0006654 phosphatidic acid biosynthetic process 4
GO:0006656 phosphatidylcholine biosynthetic process 2
GO:0006661 phosphatidylinositol biosynthetic process 2
GO:0006741 NADP biosynthetic process 16
GO:0006747 FAD biosynthetic process 2
GO:0006777 Mo-molybdopterin cofactor biosynthetic process 2
GO:0006796 phosphate-containing compound metabolic process 38
GO:0006799 polyphosphate biosynthetic process 2
GO:0008654 phospholipid biosynthetic process 4
GO:0009127 purine nucleoside monophosphate biosynthetic process 2
GO:0009134 nucleoside diphosphate catabolic process 2
GO:0009143 nucleoside triphosphate catabolic process 14
GO:0009152 purine ribonucleotide biosynthetic process 2
GO:0009166 nucleotide catabolic process 2
GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process 2
GO:0009190 cyclic nucleotide biosynthetic process 2
GO:0009202 deoxyribonucleoside triphosphate biosynthetic process 2
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 2
GO:0009229 thiamine diphosphate biosynthetic process 2
GO:0009263 deoxyribonucleotide biosynthetic process 4
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 12
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010922 positive regulation of phosphatase activity 12
GO:0015936 coenzyme A metabolic process 10
GO:0015938 coenzyme A catabolic process 2
GO:0015966 diadenosine tetraphosphate biosynthetic process 2
GO:0015969 guanosine tetraphosphate metabolic process 6
GO:0015986 ATP synthesis coupled proton transport 22
GO:0016024 CDP-diacylglycerol biosynthetic process 2
GO:0016255 attachment of GPI anchor to protein 14
GO:0016310 phosphorylation 20
GO:0016311 dephosphorylation 10
GO:0018108 peptidyl-tyrosine phosphorylation 6
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process 2
GO:0019365 pyridine nucleotide salvage 6
GO:0019427 acetyl-CoA biosynthetic process from acetate 2
GO:0019637 organophosphate metabolic process 4
GO:0030388 fructose 1,6-bisphosphate metabolic process 20
GO:0032049 cardiolipin biosynthetic process 8
GO:0032147 activation of protein kinase activity 10
GO:0032264 IMP salvage 18
GO:0032324 molybdopterin cofactor biosynthetic process 4
GO:0033320 UDP-D-xylose biosynthetic process 4
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2
GO:0033674 positive regulation of kinase activity 6
GO:0033866 nucleoside bisphosphate biosynthetic process 2
GO:0034355 NAD salvage 2
GO:0035303 regulation of dephosphorylation 2
GO:0035335 peptidyl-tyrosine dephosphorylation 2
GO:0035336 long-chain fatty-acyl-CoA metabolic process 6
GO:0035407 histone H3-T11 phosphorylation 6
GO:0035970 peptidyl-threonine dephosphorylation 2
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process 4
GO:0036289 peptidyl-serine autophosphorylation 2
GO:0042351 'de novo' GDP-L-fucose biosynthetic process 8
GO:0043407 negative regulation of MAP kinase activity 2
GO:0043549 regulation of kinase activity 2
GO:0043666 regulation of phosphoprotein phosphatase activity 4
GO:0043987 histone H3-S10 phosphorylation 2
GO:0044205 'de novo' UMP biosynthetic process 2
GO:0044209 AMP salvage 8
GO:0045337 farnesyl diphosphate biosynthetic process 2
GO:0045338 farnesyl diphosphate metabolic process 6
GO:0045339 farnesyl diphosphate catabolic process 14
GO:0046167 glycerol-3-phosphate biosynthetic process 4
GO:0046168 glycerol-3-phosphate catabolic process 2
GO:0046337 phosphatidylethanolamine metabolic process 2
GO:0046434 organophosphate catabolic process 6
GO:0046470 phosphatidylcholine metabolic process 2
GO:0046473 phosphatidic acid metabolic process 4
GO:0046488 phosphatidylinositol metabolic process 2
GO:0046710 GDP metabolic process 2
GO:0046777 protein autophosphorylation 12
GO:0046854 phosphatidylinositol phosphate biosynthetic process 2
GO:0046855 inositol phosphate dephosphorylation 4
GO:0046856 phosphatidylinositol dephosphorylation 8
GO:0046949 fatty-acyl-CoA biosynthetic process 4
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0052746 inositol phosphorylation 10
GO:0061866 negative regulation of histone H3-S10 phosphorylation 2
GO:0070262 peptidyl-serine dephosphorylation 24
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0071900 regulation of protein serine/threonine kinase activity 8
GO:0080020 regulation of coenzyme A biosynthetic process 4
GO:0080163 regulation of protein serine/threonine phosphatase activity 6
GO:0106046 guanine deglycation, glyoxal removal 2
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1901293 nucleoside phosphate biosynthetic process 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 2
GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process 6
GO:1903730 regulation of phosphatidate phosphatase activity 6
GO:1905183 negative regulation of protein serine/threonine phosphatase activity 2
GO:1990164 histone H2A phosphorylation 8
GO:2001294 malonyl-CoA catabolic process 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001