Functional clusters

Information

  • Type Gene Ontology
  • Description phosphate-containing compound metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-9 3 CH_aar_248 9 16 0.000566664
Camellia sinensis var. sinensis Chr10 3 CH_camsi_324 12 18 0.000000825148
Eucalyptus grandis Chr04 3 CH_egr_152 21 24 2.95806e-16
Eucalyptus grandis Chr01 3 CH_egr_178 20 23 0.0000000000000033323
Eucalyptus grandis Chr10 3 CH_egr_778 11 17 0.000179173
Helianthus annuus HanXRQChr09 3 CH_han_226 11 12 0.000000030628
Helianthus annuus HanXRQChr10 3 CH_han_345 12 18 0.00000218566
Medicago truncatula chr5 3 CH_mtr_188 21 58 0.000000000835404
Medicago truncatula chr8 3 CH_mtr_441 17 59 0.0000163856
Oryza sativa ssp. japonica chr08 3 CH_osa_424 8 10 0.000483909
Salix brachista GWHAAZH00000019 3 CH_sbr_188 22 79 0.00000651012
Sequoiadendron giganteum chr2 3 CH_sgi_1170 10 18 0.000179574
Sequoiadendron giganteum chr8 3 CH_sgi_257 23 46 0.000000000000301255
Sequoiadendron giganteum chr6 3 CH_sgi_830 15 37 0.00000714343
Solanum lycopersicum SL4.0ch03 3 CH_sly_524 19 63 0.000510493
Selaginella moellendorffii scaffold_2 3 CH_smo_181 13 39 0.000631794
Solanum pennellii Spenn-ch12 3 CH_spe_292 8 12 0.0000532632
Tarenaya hassleriana NW_010960188.1 3 CH_tha_166 11 24 0.000442113
Tripterygium wilfordii NC_052236.1 3 CH_twi_63 13 17 0.00000000166633
Aethionema arabicum LG-9 4 CH_aar_248 9 16 0.000566664
Camellia sinensis var. sinensis Chr10 4 CH_camsi_324 12 18 0.000000825148
Eucalyptus grandis Chr04 4 CH_egr_152 21 24 2.95806e-16
Eucalyptus grandis Chr01 4 CH_egr_178 20 23 0.0000000000000033323
Eucalyptus grandis Chr10 4 CH_egr_778 11 17 0.000179173
Helianthus annuus HanXRQChr09 4 CH_han_226 11 12 0.000000030628
Helianthus annuus HanXRQChr10 4 CH_han_345 12 18 0.00000218566
Medicago truncatula chr5 4 CH_mtr_188 21 58 0.000000000835404
Medicago truncatula chr8 4 CH_mtr_441 17 59 0.0000163856
Oryza sativa ssp. japonica chr08 4 CH_osa_424 8 10 0.000483909
Salix brachista GWHAAZH00000019 4 CH_sbr_188 22 79 0.00000651012
Sequoiadendron giganteum chr2 4 CH_sgi_1170 10 18 0.000179574
Sequoiadendron giganteum chr8 4 CH_sgi_257 23 46 0.000000000000301255
Sequoiadendron giganteum chr6 4 CH_sgi_830 15 37 0.00000714343
Solanum lycopersicum SL4.0ch03 4 CH_sly_524 19 63 0.000510493
Selaginella moellendorffii scaffold_2 4 CH_smo_181 13 39 0.000631794
Solanum pennellii Spenn-ch12 4 CH_spe_292 8 12 0.0000532632
Tarenaya hassleriana NW_010960188.1 4 CH_tha_166 11 24 0.000442113
Tripterygium wilfordii NC_052236.1 4 CH_twi_63 13 17 0.00000000166633

Available child term results

Ontology identifier Description Number of clusters
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 14
GO:0006002 fructose 6-phosphate metabolic process 8
GO:0006003 fructose 2,6-bisphosphate metabolic process 16
GO:0006085 acetyl-CoA biosynthetic process 2
GO:0006096 glycolytic process 20
GO:0006104 succinyl-CoA metabolic process 6
GO:0006110 regulation of glycolytic process 2
GO:0006167 AMP biosynthetic process 8
GO:0006176 dATP biosynthetic process from ADP 4
GO:0006182 cGMP biosynthetic process 6
GO:0006183 GTP biosynthetic process 4
GO:0006189 'de novo' IMP biosynthetic process 4
GO:0006226 dUMP biosynthetic process 6
GO:0006228 UTP biosynthetic process 2
GO:0006231 dTMP biosynthetic process 2
GO:0006233 dTDP biosynthetic process 4
GO:0006468 protein phosphorylation 824
GO:0006470 protein dephosphorylation 2
GO:0006506 GPI anchor biosynthetic process 14
GO:0006644 phospholipid metabolic process 2
GO:0006654 phosphatidic acid biosynthetic process 4
GO:0006656 phosphatidylcholine biosynthetic process 2
GO:0006661 phosphatidylinositol biosynthetic process 2
GO:0006741 NADP biosynthetic process 16
GO:0006747 FAD biosynthetic process 2
GO:0006777 Mo-molybdopterin cofactor biosynthetic process 2
GO:0008654 phospholipid biosynthetic process 4
GO:0009127 purine nucleoside monophosphate biosynthetic process 2
GO:0009134 nucleoside diphosphate catabolic process 2
GO:0009143 nucleoside triphosphate catabolic process 14
GO:0009152 purine ribonucleotide biosynthetic process 2
GO:0009166 nucleotide catabolic process 2
GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process 2
GO:0009190 cyclic nucleotide biosynthetic process 2
GO:0009202 deoxyribonucleoside triphosphate biosynthetic process 2
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 2
GO:0009229 thiamine diphosphate biosynthetic process 2
GO:0009263 deoxyribonucleotide biosynthetic process 4
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 12
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010922 positive regulation of phosphatase activity 12
GO:0015936 coenzyme A metabolic process 10
GO:0015938 coenzyme A catabolic process 2
GO:0015966 diadenosine tetraphosphate biosynthetic process 2
GO:0015969 guanosine tetraphosphate metabolic process 6
GO:0015986 ATP synthesis coupled proton transport 22
GO:0016024 CDP-diacylglycerol biosynthetic process 2
GO:0016255 attachment of GPI anchor to protein 14
GO:0016310 phosphorylation 20
GO:0016311 dephosphorylation 10
GO:0018108 peptidyl-tyrosine phosphorylation 6
GO:0019365 pyridine nucleotide salvage 6
GO:0019427 acetyl-CoA biosynthetic process from acetate 2
GO:0030388 fructose 1,6-bisphosphate metabolic process 20
GO:0032049 cardiolipin biosynthetic process 8
GO:0032147 activation of protein kinase activity 10
GO:0032264 IMP salvage 18
GO:0032324 molybdopterin cofactor biosynthetic process 4
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2
GO:0033674 positive regulation of kinase activity 6
GO:0033866 nucleoside bisphosphate biosynthetic process 2
GO:0034355 NAD salvage 2
GO:0035303 regulation of dephosphorylation 2
GO:0035335 peptidyl-tyrosine dephosphorylation 2
GO:0035336 long-chain fatty-acyl-CoA metabolic process 6
GO:0035407 histone H3-T11 phosphorylation 6
GO:0035970 peptidyl-threonine dephosphorylation 2
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process 4
GO:0036289 peptidyl-serine autophosphorylation 2
GO:0043407 negative regulation of MAP kinase activity 2
GO:0043549 regulation of kinase activity 2
GO:0043666 regulation of phosphoprotein phosphatase activity 4
GO:0043987 histone H3-S10 phosphorylation 2
GO:0044205 'de novo' UMP biosynthetic process 2
GO:0044209 AMP salvage 8
GO:0045337 farnesyl diphosphate biosynthetic process 2
GO:0045338 farnesyl diphosphate metabolic process 6
GO:0045339 farnesyl diphosphate catabolic process 14
GO:0046167 glycerol-3-phosphate biosynthetic process 4
GO:0046168 glycerol-3-phosphate catabolic process 2
GO:0046337 phosphatidylethanolamine metabolic process 2
GO:0046470 phosphatidylcholine metabolic process 2
GO:0046473 phosphatidic acid metabolic process 4
GO:0046488 phosphatidylinositol metabolic process 2
GO:0046710 GDP metabolic process 2
GO:0046777 protein autophosphorylation 12
GO:0046854 phosphatidylinositol phosphate biosynthetic process 2
GO:0046855 inositol phosphate dephosphorylation 4
GO:0046856 phosphatidylinositol dephosphorylation 8
GO:0046949 fatty-acyl-CoA biosynthetic process 4
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0052746 inositol phosphorylation 10
GO:0061866 negative regulation of histone H3-S10 phosphorylation 2
GO:0070262 peptidyl-serine dephosphorylation 24
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0071900 regulation of protein serine/threonine kinase activity 8
GO:0080020 regulation of coenzyme A biosynthetic process 4
GO:0080163 regulation of protein serine/threonine phosphatase activity 6
GO:0106046 guanine deglycation, glyoxal removal 2
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1901293 nucleoside phosphate biosynthetic process 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 2
GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process 6
GO:1903730 regulation of phosphatidate phosphatase activity 6
GO:1905183 negative regulation of protein serine/threonine phosphatase activity 2
GO:1990164 histone H2A phosphorylation 8
GO:2001294 malonyl-CoA catabolic process 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001