Functional clusters

Information

  • Type Gene Ontology
  • Description generation of precursor metabolites and energy

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica oleracea Boleracea_scaffold_29 3 CH_bol_59 15 76 0.000000000246221
Brassica oleracea Boleracea_scaffold_29 4 CH_bol_59 15 76 0.000000000246221

Available child term results

Ontology identifier Description Number of clusters
GO:0006096 glycolytic process 20
GO:0006099 tricarboxylic acid cycle 4
GO:0006110 regulation of glycolytic process 2
GO:0006119 oxidative phosphorylation 6
GO:0006120 mitochondrial electron transport, NADH to ubiquinone 4
GO:0006121 mitochondrial electron transport, succinate to ubiquinone 2
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c 8
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen 22
GO:0009060 aerobic respiration 4
GO:0009061 anaerobic respiration 16
GO:0009765 photosynthesis, light harvesting 110
GO:0009767 photosynthetic electron transport chain 6
GO:0009768 photosynthesis, light harvesting in photosystem I 8
GO:0009769 photosynthesis, light harvesting in photosystem II 38
GO:0009773 photosynthetic electron transport in photosystem I 2
GO:0009780 photosynthetic NADP+ reduction 4
GO:0010205 photoinhibition 6
GO:0010206 photosystem II repair 2
GO:0010230 alternative respiration 18
GO:0010270 photosystem II oxygen evolving complex assembly 8
GO:0010478 chlororespiration 2
GO:0015980 energy derivation by oxidation of organic compounds 4
GO:0019684 photosynthesis, light reaction 4
GO:0022900 electron transport chain 8
GO:0022904 respiratory electron transport chain 6
GO:0042549 photosystem II stabilization 2
GO:0042550 photosystem I stabilization 2
GO:0042773 ATP synthesis coupled electron transport 8
GO:0042775 mitochondrial ATP synthesis coupled electron transport 4
GO:0045333 cellular respiration 12
GO:0048564 photosystem I assembly 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001