Functional clusters
Information
- Type Gene Ontology
- Description energy derivation by oxidation of organic compounds
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Capsicum annuum | PGAv.1.6.scaffold1 | 3 | CH_can_436 | 4 | 11 | 0.000533868 |
Populus trichocarpa | Chr07 | 3 | CH_ptr_79 | 11 | 49 | 0.000000000000279103 |
Capsicum annuum | PGAv.1.6.scaffold1 | 4 | CH_can_436 | 4 | 11 | 0.000533868 |
Populus trichocarpa | Chr07 | 4 | CH_ptr_79 | 11 | 49 | 0.000000000000279103 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0006099 | tricarboxylic acid cycle | 4 |
GO:0006119 | oxidative phosphorylation | 6 |
GO:0006120 | mitochondrial electron transport, NADH to ubiquinone | 4 |
GO:0006121 | mitochondrial electron transport, succinate to ubiquinone | 2 |
GO:0006122 | mitochondrial electron transport, ubiquinol to cytochrome c | 8 |
GO:0006123 | mitochondrial electron transport, cytochrome c to oxygen | 22 |
GO:0009060 | aerobic respiration | 4 |
GO:0009061 | anaerobic respiration | 16 |
GO:0010230 | alternative respiration | 18 |
GO:0010478 | chlororespiration | 2 |
GO:0022904 | respiratory electron transport chain | 6 |
GO:0042773 | ATP synthesis coupled electron transport | 8 |
GO:0042775 | mitochondrial ATP synthesis coupled electron transport | 4 |
GO:0045333 | cellular respiration | 12 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |