Functional clusters
Information
- Type Gene Ontology
- Description photosynthesis, light harvesting
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_362 | 3 | CH_aag_33 | 6 | 17 | 0.00000000479783 |
| Anthoceros agrestis | Sc2ySwM_368 | 3 | CH_aag_65 | 4 | 5 | 0.000000866938 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 3 | CH_atr_92 | 4 | 4 | 0.0000000993443 |
| Brassica napus | A05 | 3 | CH_bna_597 | 3 | 4 | 0.000496706 |
| Brassica rapa | A05 | 3 | CH_bra_278 | 3 | 4 | 0.000604695 |
| Camellia sinensis var. sinensis | Chr7 | 3 | CH_camsi_75 | 6 | 7 | 0.00000000000044622 |
| Capsicum annuum | PGAv.1.6.scaffold257 | 3 | CH_can_30 | 9 | 10 | 7.70033e-20 |
| Corylus avellana | 2 | 3 | CH_cav_222 | 3 | 3 | 0.0000437356 |
| Ceratophyllum demersum | 6 | 3 | CH_cde_53 | 4 | 4 | 0.00000100076 |
| Ceratophyllum demersum | 1 | 3 | CH_cde_7 | 7 | 8 | 0.000000000000106298 |
| Carpinus fangiana | Cfa01 | 3 | CH_cfa_57 | 5 | 5 | 0.0000000000585735 |
| Cardamine hirsuta | Chr5 | 3 | CH_chi_122 | 4 | 4 | 0.000000122275 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 3 | CH_eca_172 | 4 | 8 | 0.00000256825 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 3 | CH_eca_241 | 3 | 3 | 0.0000400014 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 3 | CH_eca_56 | 5 | 6 | 0.00000000019801 |
| Eucalyptus grandis | Chr04 | 3 | CH_egr_431 | 4 | 4 | 0.0000000549714 |
| Erythranthe guttata | scaffold_13 | 3 | CH_egut_177 | 4 | 4 | 0.000000457544 |
| Erythranthe guttata | scaffold_13 | 3 | CH_egut_46 | 7 | 7 | 0.00000000000000310484 |
| Fragaria x ananassa | Fvb6-2 | 3 | CH_fan_298 | 4 | 8 | 0.0000175369 |
| Fragaria x ananassa | Fvb6-4 | 3 | CH_fan_423 | 3 | 3 | 0.000205943 |
| Fragaria x ananassa | Fvb6-3 | 3 | CH_fan_472 | 4 | 16 | 0.000452402 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_173 | 4 | 7 | 0.00000195683 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_313 | 3 | 4 | 0.000205558 |
| Helianthus annuus | HanXRQChr15 | 3 | CH_han_552 | 3 | 3 | 0.000151253 |
| Lupinus albus | Lalb_Chr07 | 3 | CH_lal_391 | 3 | 4 | 0.00068773 |
| Lonicera japonica | GWHAAZE00000002 | 3 | CH_lonja_108 | 6 | 6 | 0.000000000000312242 |
| Lonicera japonica | GWHAAZE00000001 | 3 | CH_lonja_153 | 5 | 5 | 0.00000000022666 |
| Micromonas commoda | Chr_02 | 3 | CH_mco_22 | 3 | 3 | 0.000456788 |
| Manihot esculenta | Chromosome17 | 3 | CH_mes_350 | 3 | 4 | 0.000275843 |
| Medicago truncatula | chr5 | 3 | CH_mtr_334 | 4 | 6 | 0.000000555916 |
| Nicotiana tabacum | Nitab4.5_0000592 | 3 | CH_nta_5 | 6 | 7 | 0.00000000000581859 |
| Nicotiana tabacum | Nitab4.5_0000982 | 3 | CH_nta_99 | 3 | 3 | 0.000140335 |
| Olea europaea | chr16 | 3 | CH_oeu_60 | 4 | 4 | 0.0000000679886 |
| Petunia axillaris | Peaxi162Scf00603 | 3 | CH_pax_30 | 6 | 7 | 0.00000000000880479 |
| Petunia axillaris | Peaxi162Scf00242 | 3 | CH_pax_347 | 3 | 4 | 0.000822119 |
| Physcomitrium patens | Chr10 | 3 | CH_ppa_19 | 5 | 6 | 0.0000000207659 |
| Prunus persica | Pp03 | 3 | CH_ppe_298 | 3 | 3 | 0.0000546325 |
| Pisum sativum | chr7LG7 | 3 | CH_psa_47 | 6 | 13 | 0.0000000000409644 |
| Papaver somniferum | NC_039362.1 | 3 | CH_pso_149 | 7 | 28 | 0.000000000405268 |
| Papaver somniferum | NC_039366.1 | 3 | CH_pso_365 | 6 | 55 | 0.00000815309 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_411 | 5 | 28 | 0.0000237829 |
| Papaver somniferum | NW_020628818.1 | 3 | CH_pso_640 | 5 | 52 | 0.00061392 |
| Phaseolus vulgaris | Chr04 | 3 | CH_pvu_14 | 11 | 16 | 2.26299e-23 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_135 | 7 | 19 | 0.00000000000416737 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_210 | 5 | 8 | 0.00000000443038 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_543 | 3 | 3 | 0.0000697531 |
| Solanum lycopersicum | SL4.0ch02 | 3 | CH_sly_35 | 8 | 8 | 2.92936e-18 |
| Solanum lycopersicum | SL4.0ch03 | 3 | CH_sly_458 | 3 | 3 | 0.000205212 |
| Solanum pennellii | Spenn-ch02 | 3 | CH_spe_10 | 9 | 9 | 7.99421e-23 |
| Solanum pennellii | Spenn-ch03 | 3 | CH_spe_157 | 4 | 5 | 0.000000357054 |
| Solanum tuberosum | ST4.03ch03 | 3 | CH_stu_21 | 10 | 12 | 5.94055e-23 |
| Trochodendron aralioides | group3 | 3 | CH_tar_166 | 4 | 5 | 0.00000094943 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_372 | 3 | CH_tpr_296 | 3 | 4 | 0.000266879 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 3 | CH_tpr_83 | 4 | 4 | 0.0000000859514 |
| Utricularia gibba | unitig_26 | 3 | CH_ugi_13 | 6 | 8 | 0.0000000000475511 |
| Anthoceros agrestis | Sc2ySwM_362 | 4 | CH_aag_33 | 6 | 17 | 0.00000000479783 |
| Anthoceros agrestis | Sc2ySwM_368 | 4 | CH_aag_65 | 4 | 5 | 0.000000866938 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 4 | CH_atr_92 | 4 | 4 | 0.0000000993443 |
| Brassica napus | A05 | 4 | CH_bna_597 | 3 | 4 | 0.000496706 |
| Brassica rapa | A05 | 4 | CH_bra_278 | 3 | 4 | 0.000604695 |
| Camellia sinensis var. sinensis | Chr7 | 4 | CH_camsi_75 | 6 | 7 | 0.00000000000044622 |
| Capsicum annuum | PGAv.1.6.scaffold257 | 4 | CH_can_30 | 9 | 10 | 7.70033e-20 |
| Corylus avellana | 2 | 4 | CH_cav_222 | 3 | 3 | 0.0000437356 |
| Ceratophyllum demersum | 6 | 4 | CH_cde_53 | 4 | 4 | 0.00000100076 |
| Ceratophyllum demersum | 1 | 4 | CH_cde_7 | 7 | 8 | 0.000000000000106298 |
| Carpinus fangiana | Cfa01 | 4 | CH_cfa_57 | 5 | 5 | 0.0000000000585735 |
| Cardamine hirsuta | Chr5 | 4 | CH_chi_122 | 4 | 4 | 0.000000122275 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 4 | CH_eca_172 | 4 | 8 | 0.00000256825 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 4 | CH_eca_241 | 3 | 3 | 0.0000400014 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 4 | CH_eca_56 | 5 | 6 | 0.00000000019801 |
| Eucalyptus grandis | Chr04 | 4 | CH_egr_431 | 4 | 4 | 0.0000000549714 |
| Erythranthe guttata | scaffold_13 | 4 | CH_egut_177 | 4 | 4 | 0.000000457544 |
| Erythranthe guttata | scaffold_13 | 4 | CH_egut_46 | 7 | 7 | 0.00000000000000310484 |
| Fragaria x ananassa | Fvb6-2 | 4 | CH_fan_298 | 4 | 8 | 0.0000175369 |
| Fragaria x ananassa | Fvb6-4 | 4 | CH_fan_423 | 3 | 3 | 0.000205943 |
| Fragaria x ananassa | Fvb6-3 | 4 | CH_fan_472 | 4 | 16 | 0.000452402 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_173 | 4 | 7 | 0.00000195683 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_313 | 3 | 4 | 0.000205558 |
| Helianthus annuus | HanXRQChr15 | 4 | CH_han_552 | 3 | 3 | 0.000151253 |
| Lupinus albus | Lalb_Chr07 | 4 | CH_lal_391 | 3 | 4 | 0.00068773 |
| Lonicera japonica | GWHAAZE00000002 | 4 | CH_lonja_108 | 6 | 6 | 0.000000000000312242 |
| Lonicera japonica | GWHAAZE00000001 | 4 | CH_lonja_153 | 5 | 5 | 0.00000000022666 |
| Micromonas commoda | Chr_02 | 4 | CH_mco_22 | 3 | 3 | 0.000456788 |
| Manihot esculenta | Chromosome17 | 4 | CH_mes_350 | 3 | 4 | 0.000275843 |
| Medicago truncatula | chr5 | 4 | CH_mtr_334 | 4 | 6 | 0.000000555916 |
| Nicotiana tabacum | Nitab4.5_0000592 | 4 | CH_nta_5 | 6 | 7 | 0.00000000000581859 |
| Nicotiana tabacum | Nitab4.5_0000982 | 4 | CH_nta_99 | 3 | 3 | 0.000140335 |
| Olea europaea | chr16 | 4 | CH_oeu_60 | 4 | 4 | 0.0000000679886 |
| Petunia axillaris | Peaxi162Scf00603 | 4 | CH_pax_30 | 6 | 7 | 0.00000000000880479 |
| Petunia axillaris | Peaxi162Scf00242 | 4 | CH_pax_347 | 3 | 4 | 0.000822119 |
| Physcomitrium patens | Chr10 | 4 | CH_ppa_19 | 5 | 6 | 0.0000000207659 |
| Prunus persica | Pp03 | 4 | CH_ppe_298 | 3 | 3 | 0.0000546325 |
| Pisum sativum | chr7LG7 | 4 | CH_psa_47 | 6 | 13 | 0.0000000000409644 |
| Papaver somniferum | NC_039362.1 | 4 | CH_pso_149 | 7 | 28 | 0.000000000405268 |
| Papaver somniferum | NC_039366.1 | 4 | CH_pso_365 | 6 | 55 | 0.00000815309 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_411 | 5 | 28 | 0.0000237829 |
| Papaver somniferum | NW_020628818.1 | 4 | CH_pso_640 | 5 | 52 | 0.00061392 |
| Phaseolus vulgaris | Chr04 | 4 | CH_pvu_14 | 11 | 16 | 2.26299e-23 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_135 | 7 | 19 | 0.00000000000416737 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_210 | 5 | 8 | 0.00000000443038 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_543 | 3 | 3 | 0.0000697531 |
| Solanum lycopersicum | SL4.0ch02 | 4 | CH_sly_35 | 8 | 8 | 2.92936e-18 |
| Solanum lycopersicum | SL4.0ch03 | 4 | CH_sly_458 | 3 | 3 | 0.000205212 |
| Solanum pennellii | Spenn-ch02 | 4 | CH_spe_10 | 9 | 9 | 7.99421e-23 |
| Solanum pennellii | Spenn-ch03 | 4 | CH_spe_157 | 4 | 5 | 0.000000357054 |
| Solanum tuberosum | ST4.03ch03 | 4 | CH_stu_21 | 10 | 12 | 5.94055e-23 |
| Trochodendron aralioides | group3 | 4 | CH_tar_166 | 4 | 5 | 0.00000094943 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_372 | 4 | CH_tpr_296 | 3 | 4 | 0.000266879 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 4 | CH_tpr_83 | 4 | 4 | 0.0000000859514 |
| Utricularia gibba | unitig_26 | 4 | CH_ugi_13 | 6 | 8 | 0.0000000000475511 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009768 | photosynthesis, light harvesting in photosystem I | 8 |
| GO:0009769 | photosynthesis, light harvesting in photosystem II | 38 |
| GO:0010206 | photosystem II repair | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |