Functional clusters

Information

  • Type Gene Ontology
  • Description cellular respiration

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 3 CH_amhyb_10 12 63 8.04419e-17
Cardamine hirsuta ChrM 3 CH_chi_179 6 75 0.0000109117
Lotus japonicus Contig00439 3 CH_lja_40 8 30 0.0000000000128615
Nelumbo nucifera chr1 3 CH_nnu_35 9 54 0.0000000000174736
Oryza sativa ssp. japonica chr12 3 CH_osa_213 4 7 0.00000355157
Solanum lycopersicum SL4.0ch00 3 CH_sly_37 12 45 2.38924e-16
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 4 CH_amhyb_10 12 63 8.04419e-17
Cardamine hirsuta ChrM 4 CH_chi_179 6 75 0.0000109117
Lotus japonicus Contig00439 4 CH_lja_40 8 30 0.0000000000128615
Nelumbo nucifera chr1 4 CH_nnu_35 9 54 0.0000000000174736
Oryza sativa ssp. japonica chr12 4 CH_osa_213 4 7 0.00000355157
Solanum lycopersicum SL4.0ch00 4 CH_sly_37 12 45 2.38924e-16

Available child term results

Ontology identifier Description Number of clusters
GO:0006099 tricarboxylic acid cycle 4
GO:0006119 oxidative phosphorylation 6
GO:0006120 mitochondrial electron transport, NADH to ubiquinone 4
GO:0006121 mitochondrial electron transport, succinate to ubiquinone 2
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c 8
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen 22
GO:0009060 aerobic respiration 4
GO:0009061 anaerobic respiration 16
GO:0010230 alternative respiration 18
GO:0010478 chlororespiration 2
GO:0022904 respiratory electron transport chain 6
GO:0042773 ATP synthesis coupled electron transport 8
GO:0042775 mitochondrial ATP synthesis coupled electron transport 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001