Functional clusters
Information
- Type Gene Ontology
- Description photosynthesis, light harvesting in photosystem II
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrB02 | 3 | CH_bca_950 | 2 | 2 | 0.000769551 |
| Cannabis sativa | NC_044378.1 | 3 | CH_cansat_310 | 2 | 2 | 0.000393985 |
| Chara braunii | BFEA01000226 | 3 | CH_cbr_30 | 4 | 7 | 0.0000000128859 |
| Coffea canephora | chr9 | 3 | CH_ccan_94 | 3 | 14 | 0.000000198056 |
| Citrus clementina | scaffold_2 | 3 | CH_ccl_168 | 3 | 3 | 0.000000100941 |
| Daucus carota | DCARv2_Chr8 | 3 | CH_dca_165 | 3 | 3 | 0.00000277621 |
| Daucus carota | DCARv2_Chr1 | 3 | CH_dca_86 | 4 | 6 | 0.0000000159264 |
| Durio zibethinus | NW_019168037.1 | 3 | CH_dzi_275 | 2 | 2 | 0.000278093 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 3 | CH_eca_416 | 2 | 2 | 0.000448722 |
| Eutrema salsugineum | scaffold_5 | 3 | CH_esa_102 | 3 | 4 | 0.00000194812 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 3 | CH_lsa_140 | 4 | 5 | 0.00000000986667 |
| Marchantia polymorpha | scaffold_199 | 3 | CH_mpo_2 | 9 | 9 | 1.57283e-25 |
| Medicago truncatula | chr6 | 3 | CH_mtr_89 | 5 | 6 | 0.000000000000165031 |
| Physcomitrium patens | Chr02 | 3 | CH_ppa_4 | 7 | 25 | 0.000000000000339137 |
| Physcomitrium patens | Chr05 | 3 | CH_ppa_77 | 3 | 4 | 0.0000346749 |
| Prunus persica | Pp04 | 3 | CH_ppe_471 | 2 | 2 | 0.000745962 |
| Sechium edule | LG10 | 3 | CH_sed_123 | 3 | 3 | 0.00000277906 |
| Trochodendron aralioides | group9 | 3 | CH_tar_492 | 2 | 2 | 0.000900549 |
| Theobroma cacao | Chromosome_6 | 3 | CH_tca_362 | 2 | 2 | 0.000439432 |
| Brassica carinata | ChrB02 | 4 | CH_bca_950 | 2 | 2 | 0.000769551 |
| Cannabis sativa | NC_044378.1 | 4 | CH_cansat_310 | 2 | 2 | 0.000393985 |
| Chara braunii | BFEA01000226 | 4 | CH_cbr_30 | 4 | 7 | 0.0000000128859 |
| Coffea canephora | chr9 | 4 | CH_ccan_94 | 3 | 14 | 0.000000198056 |
| Citrus clementina | scaffold_2 | 4 | CH_ccl_168 | 3 | 3 | 0.000000100941 |
| Daucus carota | DCARv2_Chr8 | 4 | CH_dca_165 | 3 | 3 | 0.00000277621 |
| Daucus carota | DCARv2_Chr1 | 4 | CH_dca_86 | 4 | 6 | 0.0000000159264 |
| Durio zibethinus | NW_019168037.1 | 4 | CH_dzi_275 | 2 | 2 | 0.000278093 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 4 | CH_eca_416 | 2 | 2 | 0.000448722 |
| Eutrema salsugineum | scaffold_5 | 4 | CH_esa_102 | 3 | 4 | 0.00000194812 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 4 | CH_lsa_140 | 4 | 5 | 0.00000000986667 |
| Marchantia polymorpha | scaffold_199 | 4 | CH_mpo_2 | 9 | 9 | 1.57283e-25 |
| Medicago truncatula | chr6 | 4 | CH_mtr_89 | 5 | 6 | 0.000000000000165031 |
| Physcomitrium patens | Chr02 | 4 | CH_ppa_4 | 7 | 25 | 0.000000000000339137 |
| Physcomitrium patens | Chr05 | 4 | CH_ppa_77 | 3 | 4 | 0.0000346749 |
| Prunus persica | Pp04 | 4 | CH_ppe_471 | 2 | 2 | 0.000745962 |
| Sechium edule | LG10 | 4 | CH_sed_123 | 3 | 3 | 0.00000277906 |
| Trochodendron aralioides | group9 | 4 | CH_tar_492 | 2 | 2 | 0.000900549 |
| Theobroma cacao | Chromosome_6 | 4 | CH_tca_362 | 2 | 2 | 0.000439432 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |