Functional clusters

Information

  • Type MapMan
  • Description Nucleotide metabolism

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Davidia involucrata GWHABJS00000019 1 CH_din_295 7 62 0.00013021
Solanum tuberosum ST4.03ch11 1 CH_stu_534 5 27 0.000316014
Davidia involucrata GWHABJS00000019 2 CH_din_295 7 62 0.00013021
Solanum tuberosum ST4.03ch11 2 CH_stu_534 5 27 0.000316014

Available child term results

Ontology identifier Description Number of clusters
6.1.1 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism 8
6.1.1.1 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.phosphoribosyldiphosphate 5-amidotransferase 10
6.1.1.10 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.adenylosuccinate synthase 8
6.1.1.2 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.glycinamide RN synthetase (GARS) 3
6.1.1.3 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.glycinamide RN transformylase 4
6.1.1.4 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.formylglycinamidine RN synthase 10
6.1.1.5 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.aminoimidazole RN synthase 20
6.1.1.6 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.aminoimidazole RN carboxylase 22
6.1.1.7 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.N-succinyl 5-aminoimidazole-4-carboxamide RN synthase 7
6.1.1.8 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.adenylosuccinate lyase 12
6.1.1.9 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.bifunctional 5-aminoimidazole-4-carboxamide RN transformylase and IMP cyclohydrolase 4
6.1.2.1.1 Nucleotide metabolism.purines.GMP biosynthesis.AMP deaminase activities.membrane-associated AMP deaminase (FAC1) 16
6.1.2.2 Nucleotide metabolism.purines.GMP biosynthesis.IMP dehydrogenase (IMPDH) 4
6.1.2.3 Nucleotide metabolism.purines.GMP biosynthesis.GMP synthetase (GMPS) 6
6.1.3.1 Nucleotide metabolism.purines.salvage pathway.adenine phosphoribosyltransferase 12
6.1.3.2 Nucleotide metabolism.purines.salvage pathway.hypoxanthine/guanine phosphoribosyltransferase 6
6.1.3.3 Nucleotide metabolism.purines.salvage pathway.adenosine kinase 12
6.1.4.1 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase 4
6.1.4.2 Nucleotide metabolism.purines.phosphotransfers.guanylate kinase 12
6.1.5.1 Nucleotide metabolism.purines.catabolism.5'-nucleotidase 5
6.1.5.10 Nucleotide metabolism.purines.catabolism.ureidoglycolate amidohydrolase 8
6.1.5.2 Nucleotide metabolism.purines.catabolism.guanosine deaminase (GSDA) 32
6.1.5.3.2 Nucleotide metabolism.purines.catabolism.NSH1-NSH2 nucleoside hydrolase heterodimer.component NSH2 5
6.1.5.4 Nucleotide metabolism.purines.catabolism.xanthine dehydrogenase (XDH) 13
6.1.5.5 Nucleotide metabolism.purines.catabolism.urate oxidase (UOX) 4
6.1.5.6 Nucleotide metabolism.purines.catabolism.S-allantoin synthase (TTL) 4
6.1.5.7 Nucleotide metabolism.purines.catabolism.allantoinase 10
6.1.5.8 Nucleotide metabolism.purines.catabolism.allantoate amidohydrolase (AAH) 6
6.1.5.9 Nucleotide metabolism.purines.catabolism.ureidoglycine aminohydrolase 1
6.1.6.2 Nucleotide metabolism.purines.extracellular ATP.apyrase (APY) 16
6.1.6.3 Nucleotide metabolism.purines.extracellular ATP.adenosine proton symporter (ENT3) 87
6.1.6.4 Nucleotide metabolism.purines.extracellular ATP.nucleoside hydrolase (NSH3) 61
6.2.1.2 Nucleotide metabolism.pyrimidines.de novo biosynthesis.aspartate transcarbamoylase 6
6.2.1.3 Nucleotide metabolism.pyrimidines.de novo biosynthesis.dihydroorotase 6
6.2.1.4 Nucleotide metabolism.pyrimidines.de novo biosynthesis.dihydroorotate dehydrogenase 6
6.2.1.5 Nucleotide metabolism.pyrimidines.de novo biosynthesis.UMP synthase 10
6.2.1.6 Nucleotide metabolism.pyrimidines.de novo biosynthesis.CTP synthetase 8
6.2.2.1 Nucleotide metabolism.pyrimidines.salvage pathway.uridine/cytidine kinase (UCK) 14
6.2.2.2 Nucleotide metabolism.pyrimidines.salvage pathway.uracil phosphoribosyltransferase (UPP) 8
6.2.3.1 Nucleotide metabolism.pyrimidines.phosphotransfers.uridylate kinase 11
6.2.3.2 Nucleotide metabolism.pyrimidines.phosphotransfers.plastidial UMP kinase (PUMPKIN) 2
6.2.4.1 Nucleotide metabolism.pyrimidines.catabolism.5'-nucleotidase 12
6.2.4.2 Nucleotide metabolism.pyrimidines.catabolism.cytidine deaminase 17
6.2.4.3 Nucleotide metabolism.pyrimidines.catabolism.dihydropyrimidine dehydrogenase (PYD1) 4
6.2.4.4 Nucleotide metabolism.pyrimidines.catabolism.dihydopyrimidine aminohydrolase (PYD2) 21
6.2.4.5 Nucleotide metabolism.pyrimidines.catabolism.beta-ureidopropionase (PYD3) 14
6.2.4.6 Nucleotide metabolism.pyrimidines.catabolism.alanine aminotransferase (PYD4) 4
6.2.4.7.1 Nucleotide metabolism.pyrimidines.catabolism.pseudouridine catabolic pathway.pseudouridine kinase (PUKI) 10
6.2.4.7.2 Nucleotide metabolism.pyrimidines.catabolism.pseudouridine catabolic pathway.pseudouridine monophosphate glycosylase (PUMY) 4
6.3 Nucleotide metabolism.deoxynucleotides 2
6.3.1.1.1 Nucleotide metabolism.deoxynucleotides.biosynthesis.ribonucleoside-diphosphate reductase heterodimer.large subunit 4
6.3.1.1.2 Nucleotide metabolism.deoxynucleotides.biosynthesis.ribonucleoside-diphosphate reductase heterodimer.small subunit 8
6.3.1.2 Nucleotide metabolism.deoxynucleotides.biosynthesis.thymidylate synthase 18
6.3.2.2 Nucleotide metabolism.deoxynucleotides.salvage pathway.multisubstrate deoxyribonucleoside kinase (TK2) 6
6.3.2.3 Nucleotide metabolism.deoxynucleotides.salvage pathway.thymidylate kinase 6
6.3.2.4 Nucleotide metabolism.deoxynucleotides.salvage pathway.nucleoside diphosphate kinase 10
6.3.3.1 Nucleotide metabolism.deoxynucleotides.catabolism.dCMP deaminase 4
6.3.3.2 Nucleotide metabolism.deoxynucleotides.catabolism.deoxyuridine triphosphatase (DUT) 8
6.3.3.3 Nucleotide metabolism.deoxynucleotides.catabolism.deoxyguanidine triphosphatase (VEN4) 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001