Functional clusters
Information
- Type MapMan
- Description Nucleotide metabolism.purines.extracellular ATP.adenosine proton symporter (ENT3)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 1 | CH_aar_248 | 2 | 2 | 0.000547395 |
| Acer truncatum | chr10 | 1 | CH_acertr_111 | 3 | 3 | 0.00000002982 |
| Arabidopsis lyrata | scaffold_6 | 1 | CH_aly_111 | 3 | 3 | 0.0000000653509 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_76 | 4 | 16 | 0.00000000192507 |
| Amborella trichopoda | AmTr_v1.0_scaffold00072 | 1 | CH_atr_208 | 2 | 2 | 0.0000794407 |
| Brassica carinata | ChrB01 | 1 | CH_bca_28 | 5 | 8 | 0.0000000000000405113 |
| Brassica napus | A09 | 1 | CH_bna_114 | 4 | 8 | 0.00000000134171 |
| Brassica napus | C09 | 1 | CH_bna_65 | 4 | 4 | 0.0000000000191736 |
| Brassica oleracea | C9 | 1 | CH_bol_114 | 3 | 4 | 0.00000022435 |
| Brassica rapa | A09 | 1 | CH_bra_41 | 4 | 4 | 0.0000000000166177 |
| Coffea canephora | chr2 | 1 | CH_ccan_110 | 3 | 37 | 0.00000211364 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_411 | 2 | 2 | 0.000246093 |
| Cardamine hirsuta | Chr8 | 1 | CH_chi_26 | 5 | 5 | 0.00000000000000102737 |
| Capsella rubella | scaffold_6 | 1 | CH_cru_153 | 3 | 3 | 0.000000280668 |
| Daucus carota | DCARv2_Chr1 | 1 | CH_dca_443 | 2 | 2 | 0.000637775 |
| Daucus carota | DCARv2_Chr2 | 1 | CH_dca_444 | 2 | 2 | 0.000637775 |
| Eucalyptus grandis | Chr04 | 1 | CH_egr_241 | 4 | 5 | 0.0000000000150368 |
| Eutrema salsugineum | scaffold_3 | 1 | CH_esa_81 | 3 | 3 | 0.0000000869853 |
| Fragaria vesca | Fvb3 | 1 | CH_fve_413 | 2 | 2 | 0.000353461 |
| Glycine max | Gm15 | 1 | CH_gma_527 | 2 | 2 | 0.000379557 |
| Gossypium raimondii | Chr10 | 1 | CH_gra_374 | 2 | 2 | 0.000321664 |
| Helianthus annuus | HanXRQChr16 | 1 | CH_han_649 | 2 | 2 | 0.000386429 |
| Lotus japonicus | chr6 | 1 | CH_lja_130 | 3 | 3 | 0.000000153406 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 1 | CH_lsa_410 | 2 | 2 | 0.000154202 |
| Manihot esculenta | Chromosome13 | 1 | CH_mes_378 | 2 | 2 | 0.000183189 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_289 | 2 | 2 | 0.0000436015 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_66 | 3 | 3 | 0.00000000418381 |
| Pisum sativum | chr1LG6 | 1 | CH_psa_381 | 2 | 2 | 0.000521635 |
| Populus trichocarpa | Chr04 | 1 | CH_ptr_167 | 3 | 3 | 0.0000000501143 |
| Phaseolus vulgaris | Chr06 | 1 | CH_pvu_161 | 3 | 4 | 0.000000323876 |
| Quercus lobata | 5 | 1 | CH_qlo_105 | 5 | 5 | 3.1978e-16 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_674 | 2 | 2 | 0.000239192 |
| Salvia bowleyana | GWHASIU00000005 | 1 | CH_sbo_62 | 4 | 5 | 0.00000000000141282 |
| Salix brachista | GWHAAZH00000004 | 1 | CH_sbr_84 | 3 | 3 | 0.00000000595633 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_185 | 3 | 5 | 0.000000516688 |
| Schrenkiella parvula | ch6-1 | 1 | CH_spa_80 | 3 | 3 | 0.0000000371957 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_536 | 2 | 3 | 0.000800581 |
| Selenicereus undatus | Scaffold_33680 | 1 | CH_sun_187 | 2 | 3 | 0.000217984 |
| Trochodendron aralioides | group3 | 1 | CH_tar_382 | 2 | 2 | 0.00018011 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 1 | CH_tpr_119 | 3 | 3 | 0.000000481346 |
| Tripterygium wilfordii | NC_052237.1 | 1 | CH_twi_105 | 3 | 5 | 0.000000466169 |
| Vigna mungo | CM024075.1 | 1 | CH_vmu_361 | 2 | 2 | 0.000387685 |
| Vanilla planifolia | CM028154.1 | 1 | CH_vpl_70 | 3 | 4 | 0.00000114635 |
| Zea mays | 7 | 1 | CH_zma_69 | 3 | 6 | 0.0000000784282 |
| Aethionema arabicum | LG-2 | 2 | CH_aar_248 | 2 | 2 | 0.000547395 |
| Acer truncatum | chr10 | 2 | CH_acertr_111 | 3 | 3 | 0.00000002982 |
| Arabidopsis lyrata | scaffold_6 | 2 | CH_aly_111 | 3 | 3 | 0.0000000653509 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_76 | 4 | 16 | 0.00000000192507 |
| Amborella trichopoda | AmTr_v1.0_scaffold00072 | 2 | CH_atr_208 | 2 | 2 | 0.0000794407 |
| Brassica carinata | ChrB01 | 2 | CH_bca_28 | 5 | 8 | 0.0000000000000405113 |
| Brassica oleracea | C9 | 2 | CH_bol_114 | 3 | 4 | 0.00000022435 |
| Brassica rapa | A09 | 2 | CH_bra_41 | 4 | 4 | 0.0000000000166177 |
| Coffea canephora | chr2 | 2 | CH_ccan_110 | 3 | 37 | 0.00000211364 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_411 | 2 | 2 | 0.000246093 |
| Cardamine hirsuta | Chr8 | 2 | CH_chi_26 | 5 | 5 | 0.00000000000000102737 |
| Capsella rubella | scaffold_6 | 2 | CH_cru_153 | 3 | 3 | 0.000000280668 |
| Daucus carota | DCARv2_Chr1 | 2 | CH_dca_443 | 2 | 2 | 0.000637775 |
| Daucus carota | DCARv2_Chr2 | 2 | CH_dca_444 | 2 | 2 | 0.000637775 |
| Eucalyptus grandis | Chr04 | 2 | CH_egr_241 | 4 | 5 | 0.0000000000150368 |
| Eutrema salsugineum | scaffold_3 | 2 | CH_esa_81 | 3 | 3 | 0.0000000869853 |
| Fragaria vesca | Fvb3 | 2 | CH_fve_413 | 2 | 2 | 0.000353461 |
| Gossypium hirsutum | D06 | 2 | CH_ghi_722 | 2 | 2 | 0.000400523 |
| Glycine max | Gm15 | 2 | CH_gma_527 | 2 | 2 | 0.000379557 |
| Gossypium raimondii | Chr10 | 2 | CH_gra_374 | 2 | 2 | 0.000321664 |
| Helianthus annuus | HanXRQChr16 | 2 | CH_han_649 | 2 | 2 | 0.000386429 |
| Lotus japonicus | chr6 | 2 | CH_lja_130 | 3 | 3 | 0.000000153406 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 2 | CH_lsa_410 | 2 | 2 | 0.000154202 |
| Manihot esculenta | Chromosome13 | 2 | CH_mes_378 | 2 | 2 | 0.000183189 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_289 | 2 | 2 | 0.0000436015 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_66 | 3 | 3 | 0.00000000418381 |
| Pisum sativum | chr1LG6 | 2 | CH_psa_381 | 2 | 2 | 0.000521635 |
| Populus trichocarpa | Chr04 | 2 | CH_ptr_167 | 3 | 3 | 0.0000000501143 |
| Phaseolus vulgaris | Chr06 | 2 | CH_pvu_161 | 3 | 4 | 0.000000323876 |
| Quercus lobata | 5 | 2 | CH_qlo_105 | 5 | 5 | 3.1978e-16 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_674 | 2 | 2 | 0.000239192 |
| Salvia bowleyana | GWHASIU00000005 | 2 | CH_sbo_62 | 4 | 5 | 0.00000000000141282 |
| Salix brachista | GWHAAZH00000004 | 2 | CH_sbr_84 | 3 | 3 | 0.00000000595633 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_185 | 3 | 5 | 0.000000516688 |
| Schrenkiella parvula | ch6-1 | 2 | CH_spa_80 | 3 | 3 | 0.0000000371957 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_536 | 2 | 3 | 0.000800581 |
| Selenicereus undatus | Scaffold_33680 | 2 | CH_sun_187 | 2 | 3 | 0.000217984 |
| Trochodendron aralioides | group3 | 2 | CH_tar_382 | 2 | 2 | 0.00018011 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 2 | CH_tpr_119 | 3 | 3 | 0.000000481346 |
| Tripterygium wilfordii | NC_052237.1 | 2 | CH_twi_105 | 3 | 5 | 0.000000466169 |
| Vigna mungo | CM024075.1 | 2 | CH_vmu_361 | 2 | 2 | 0.000387685 |
| Vanilla planifolia | CM028154.1 | 2 | CH_vpl_70 | 3 | 4 | 0.00000114635 |
| Zea mays | 7 | 2 | CH_zma_69 | 3 | 6 | 0.0000000784282 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |