Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12430 Brassica napus
A01p26590 Brassica napus
A02p41320 Brassica napus
A03p15390 Brassica napus
A08p15300 Brassica napus
A09p68070 Brassica napus
Aa31LG1G20800 Aethionema arabicum
Aa31LG6G3120 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1709 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.556 Anthoceros agrestis
Actinidia09526 Actinidia chinensis
Actinidia13465 Actinidia chinensis
Actinidia23089 Actinidia chinensis
Actinidia30138 Actinidia chinensis
Actinidia37539 Actinidia chinensis
Ah.14g086270 Amaranthus hybridus
Ah.15g092700 Amaranthus hybridus
AL1G13630 Arabidopsis lyrata
AL7G33060 Arabidopsis lyrata
Aqoxy2G03717 Aquilegia oxysepala
Aqoxy4G00106 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0MSU5M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CR4GUX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GZCK2M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H34G6K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PL2FJ9 Arachis hypogaea
AT1G04020 Arabidopsis thaliana
AT4G21070 Arabidopsis thaliana
ATR0736G050 Amborella trichopoda
ATR0736G145 Amborella trichopoda
ATR1098G120 Amborella trichopoda
Atru.chr10.1032 Acer truncatum
Atru.chr5.1792 Acer truncatum
Atru.chr5.1799 Acer truncatum
AUR62002658 Chenopodium quinoa
AUR62008777 Chenopodium quinoa
AUR62025461 Chenopodium quinoa
AUR62030126 Chenopodium quinoa
BcaB03g11700 Brassica carinata
BcaC01g00718 Brassica carinata
BcaC07g36936 Brassica carinata
BcaC07g42215 Brassica carinata
BcaC07g42216 Brassica carinata
BcaC09g49696 Brassica carinata
BcaC09g51263 Brassica carinata
BcaNung03846 Brassica carinata
BcaNung05489 Brassica carinata
BolC1t01450H Brassica oleracea
BolC1t01998H Brassica oleracea
BolC3t20635H Brassica oleracea
BolC8t52778H Brassica oleracea
BraA01t02589Z Brassica rapa
BraA04t16652Z Brassica rapa
BraA08t33507Z Brassica rapa
BraA09t42142Z Brassica rapa
C02p25420 Brassica napus
C03p83540 Brassica napus
C08p52510 Brassica napus
CAN.G1582.1 Capsicum annuum
CAN.G2319.1 Capsicum annuum
CAN.G36.29 Capsicum annuum
CAN.G941.4 Capsicum annuum
CAN.G960.75 Capsicum annuum
CANSAT01G2073 Cannabis sativa
CANSAT35G0468 Cannabis sativa
CARHR003370 Cardamine hirsuta
CARHR227660 Cardamine hirsuta
Carub.0001s0318 Capsella rubella
Carub.0007s2036 Capsella rubella
Ca_00519_v3 Cicer arietinum L.
Ca_08731_v3 Cicer arietinum L.
CBR_g39265 Chara braunii
CBR_g48844 Chara braunii
Cc01_g17980 Coffea canephora
Cc09_g08610 Coffea canephora
CDE02G2599 Ceratophyllum demersum
CDE02G4764 Ceratophyllum demersum
CDE06G2199 Ceratophyllum demersum
Cfa000874 Carpinus fangiana
Cfa002466 Carpinus fangiana
Ciclev10014038m.g Citrus clementina
Ciclev10019112m.g Citrus clementina
CiPaw.02G025900 Carya illinoinensis
CiPaw.03G268500 Carya illinoinensis
CiPaw.09G117800 Carya illinoinensis
ClCG07G001270 Citrullus lanatus
COL.COLO4_08954 Corchorus olitorius
COL.COLO4_17662 Corchorus olitorius
Cpa.g.sc165.43 Carica papaya
Cpa.g.sc17.64 Carica papaya
Cpa.g.sc17.65 Carica papaya
Cre01.g018650 Chlamydomonas reinhardtii
Cre03.g174600 Chlamydomonas reinhardtii
Cre07.g334650 Chlamydomonas reinhardtii
Cre16.g672350 Chlamydomonas reinhardtii
CsaV3_1G004930 Cucumis sativus L.
CsaV3_3G028200 Cucumis sativus L.
CsaV3_6G052190 Cucumis sativus L.
CSS0002977 Camellia sinensis var. sinensis
CSS0005660 Camellia sinensis var. sinensis
CSS0015436 Camellia sinensis var. sinensis
CSS0030645 Camellia sinensis var. sinensis
CSS0040764 Camellia sinensis var. sinensis
DCAR_004683 Daucus carota
DCAR_018508 Daucus carota
DCAR_018509 Daucus carota
DCAR_018511 Daucus carota
DCAR_027877 Daucus carota
Dinv16381 Davidia involucrata
Dinv16382 Davidia involucrata
Dinv21493 Davidia involucrata
Duzib132G0111 Durio zibethinus
Duzib133G0831 Durio zibethinus
Duzib138G0763 Durio zibethinus
ECA236G0529 Erigeron canadensis
ECA238G2247 Erigeron canadensis
ECA238G4240 Erigeron canadensis
EL10Ac7g17663 Beta vulgaris
EL10Ac8g19611 Beta vulgaris
Eucgr.D00242 Eucalyptus grandis
FAN11G1988 Fragaria x ananassa
FAN15G1101 Fragaria x ananassa
FAN16G2122 Fragaria x ananassa
FAN20G1076 Fragaria x ananassa
FAN21G2407 Fragaria x ananassa
FAN25G3090 Fragaria x ananassa
FvH4_2g20860 Fragaria vesca
FvH4_3g09510 Fragaria vesca
Glyma.03G165600 Glycine max
Glyma.13G220400 Glycine max
Glyma.15G092000 Glycine max
Glyma.19G166900 Glycine max
Gohir.A01G128300 Gossypium hirsutum
Gohir.A02G073500 Gossypium hirsutum
Gohir.A02G077501 Gossypium hirsutum
Gohir.A05G317471 Gossypium hirsutum
Gohir.A06G133900 Gossypium hirsutum
Gohir.A07G205000 Gossypium hirsutum
Gohir.A09G194133 Gossypium hirsutum
Gohir.A12G075500 Gossypium hirsutum
Gohir.D01G116400 Gossypium hirsutum
Gohir.D07G211000 Gossypium hirsutum
Gohir.D07G211100 Gossypium hirsutum
Gorai.001G238400 Gossypium raimondii
Gorai.001G238500 Gossypium raimondii
Gorai.002G141900 Gossypium raimondii
GSVIVG01021576001 Vitis vinifera
GSVIVG01028388001 Vitis vinifera
HanXRQChr04g0112101 Helianthus annuus
HanXRQChr09g0253951 Helianthus annuus
HanXRQChr12g0385601 Helianthus annuus
HanXRQChr14g0448831 Helianthus annuus
HanXRQChr14g0448841 Helianthus annuus
Haze_05716 Corylus avellana
Haze_24678 Corylus avellana
Hma1.2p1_0689F.1_g203770 Hydrangea macrophylla
Hma1.2p1_0689F.1_g203780 Hydrangea macrophylla
HPP92_008544 Vanilla planifolia
HPP92_014001 Vanilla planifolia
Hund05474 Selenicereus undatus
Hund18270 Selenicereus undatus
Hund21554 Selenicereus undatus
Lalb_Chr01g0019561 Lupinus albus
Lalb_Chr15g0086691 Lupinus albus
Lalb_Chr18g0055211 Lupinus albus
Lalb_Chr20g0113791 Lupinus albus
Lj1A72T50 Lonicera japonica
Lj1C1167T9 Lonicera japonica
Lj1C72G5 Lonicera japonica
Lj1g0010012 Lotus japonicus
Lj2A1144G94 Lonicera japonica
Lj6g0021423 Lotus japonicus
Lsat_1_v5_gn_2_90841 Lactuca sativa
Lsat_1_v5_gn_2_90941 Lactuca sativa
Lsat_1_v5_gn_4_49621 Lactuca sativa
Lsat_1_v5_gn_7_32301 Lactuca sativa
Manes.12G035400 Manihot esculenta
Manes.13G037400 Manihot esculenta
Manes.17G074900 Manihot esculenta
Mapoly0103s0079 Marchantia polymorpha
MBI02_g26596_MAGBIO Magnolia biondii
MBI02_g26597_MAGBIO Magnolia biondii
MBI10_g19238_MAGBIO Magnolia biondii
MBI10_g19239_MAGBIO Magnolia biondii
MCO03G416 Micromonas commoda
MD04G1109800 Malus domestica
MD05G1060000 Malus domestica
MD05G1192200 Malus domestica
MD05G1277200 Malus domestica
MD06G1051400 Malus domestica
MD08G1025000 Malus domestica
MD10G1043800 Malus domestica
MD10G1178800 Malus domestica
MD10G1256100 Malus domestica
MD15G1297700 Malus domestica
MD17G1274500 Malus domestica
Medtr2g018880 Medicago truncatula
Medtr7g098170 Medicago truncatula
MELO3C007093.2 Cucumis melo
MELO3C012852.2 Cucumis melo
MELO3C031371.2 Cucumis melo
Migut.D00462 Erythranthe guttata
Migut.M01869 Erythranthe guttata
MSTRG.21471 Avicennia marina
Nitab4.5_0000315g0170 Nicotiana tabacum
Nitab4.5_0000326g0240 Nicotiana tabacum
Nitab4.5_0002389g0080 Nicotiana tabacum
Nitab4.5_0003295g0150 Nicotiana tabacum
Nitab4.5_0006980g0010 Nicotiana tabacum
Nitab4.5_0008802g0010 Nicotiana tabacum
Nn1g02904 Nelumbo nucifera
Nn4g24186 Nelumbo nucifera
Nn4g26648 Nelumbo nucifera
Oeu028894.1 Olea europaea
Oeu039662.2 Olea europaea
Oeu041164.2 Olea europaea
Oeu058467.1 Olea europaea
Oeu064635.2 Olea europaea
Os04g0512400 Oryza sativa ssp. japonica
Os05g0486600 Oryza sativa ssp. japonica
Os05g0512000 Oryza sativa ssp. japonica
Peaxi162Scf00045g00234 Petunia axillaris
Peaxi162Scf00200g00009 Petunia axillaris
Peaxi162Scf00276g01317 Petunia axillaris
Peaxi162Scf00307g00133 Petunia axillaris
Peaxi162Scf00415g00517 Petunia axillaris
Peaxi162Scf00710g00111 Petunia axillaris
Peaxi162Scf01157g00215 Petunia axillaris
PGR031G3169 Punica granatum
PGR083G2164 Punica granatum
PGSC0003DMG400005381 Solanum tuberosum
PGSC0003DMG400014714 Solanum tuberosum
Phvul.001G163300 Phaseolus vulgaris
Phvul.006G167200 Phaseolus vulgaris
Potri.001G358100 Populus trichocarpa
Potri.002G259000 Populus trichocarpa
PRCOL_00000861 Prasinoderma coloniale
PRCOL_00002275 Prasinoderma coloniale
PRCOL_00004900 Prasinoderma coloniale
PRCOL_00005909 Prasinoderma coloniale
Prupe.4G087500 Prunus persica
Prupe.8G218500 Prunus persica
Psat1g191360 Pisum sativum
Psat3g055520 Pisum sativum
PSO017G0462 Papaver somniferum
PSO017G4739 Papaver somniferum
PSO063G0426 Papaver somniferum
PSO063G2080 Papaver somniferum
PSO063G3931 Papaver somniferum
PSO541G3782 Papaver somniferum
PSO675G2687 Papaver somniferum
PSO675G4242 Papaver somniferum
PSO782G4898 Papaver somniferum
QL05p054340 Quercus lobata
QL09p040907 Quercus lobata
RcHm_v2.0_Chr5g0015091 Rosa chinensis
RcHm_v2.0_Chr6g0287261 Rosa chinensis
Rhsim01G0261400 Rhododendron simsii
Rhsim13G0038900 Rhododendron simsii
Rhsim13G0118700 Rhododendron simsii
Sabra02G0197000 Salix brachista
Sabra16G0235800 Salix brachista
SalBow6G0550 Salvia bowleyana
Sc17g0002630 Simmondsia chinensis
Sc17g0004770 Simmondsia chinensis
Sed0014923 Sechium edule
Sed0023051 Sechium edule
Sed0027382 Sechium edule
SEGI_28504 Sequoiadendron giganteum
SGA_v2.0_scaffold138G35197 Striga asiatica
SGA_v2.0_scaffold1G00225 Striga asiatica
SHI09719 Sapria himalayana
SHI09720 Sapria himalayana
SHI39416 Sapria himalayana
SMO143G0028 Selaginella moellendorffii
Solyc05g016230.3 Solanum lycopersicum
Solyc06g008210.4 Solanum lycopersicum
Solyc09g066080.3 Solanum lycopersicum
Solyc12g041980.3 Solanum lycopersicum
Solyc12g042000.3 Solanum lycopersicum
Sopen05g012900 Solanum pennellii
Sopen06g003070 Solanum pennellii
Sopen08g008190 Solanum pennellii
Sopen09g012880 Solanum pennellii
Sopen09g027850 Solanum pennellii
Sopen09g027860 Solanum pennellii
Sopen12g021000 Solanum pennellii
Sp1g02860 Schrenkiella parvula
Sp7g19160 Schrenkiella parvula
TAR362G1208 Trochodendron aralioides
TAR627G0492 Trochodendron aralioides
THA.LOC104801137 Tarenaya hassleriana
THA.LOC104812328 Tarenaya hassleriana
Thecc.01G253100 Theobroma cacao
Thecc.02G010000 Theobroma cacao
Thhalv10006912m.g Eutrema salsugineum
Thhalv10024364m.g Eutrema salsugineum
TPR.G26230 Trifolium pratense
TWI53G1691 Tripterygium wilfordii
TWI75G1432 Tripterygium wilfordii
unitig_22.g5290 Utricularia gibba
unitig_37.g12084 Utricularia gibba
vmacro02699 Vaccinium macrocarpon
vmacro02700 Vaccinium macrocarpon
vmacro03421 Vaccinium macrocarpon
vmacro14807 Vaccinium macrocarpon
VMungo0540G0145 Vigna mungo
Zm00001eb077450 Zea mays
Zm00001eb245990 Zea mays
Zm00001eb292490 Zea mays

User provided reference genes

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