Gene: PGSC0003DMG400014714

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400014714
  • Transcript Identifier PGSC0003DMT400038153
  • Gene Type Coding gene
  • Location ST4.03ch06 : 1816922-1823999 : positive

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37453791
  • id PGSC0003DMG400014714.v4.03
  • uniprot M1B6E8

Descriptions

  • Description ATBARD1/BARD1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045944
IBA
GOA Databasepositive regulation of transcription by RNA polymerase II
GO:0000724
IBA
IEA
GOA Databasedouble-strand break repair via homologous recombination
GO:0010492
IEA
GOA Databasemaintenance of shoot apical meristem identity
GO:0010078
IEA
GOA Databasemaintenance of root meristem identity
GO:0009934
IEA
GOA Databaseregulation of meristem structural organization
GO:0065004
IEA
GOA Databaseprotein-DNA complex assembly
GO:0048366
IEA
GOA Databaseleaf development
GO:0045892
IEA
GOA Databasenegative regulation of transcription, DNA-templated
GO:0080182
IEA
GOA Databasehistone H3-K4 trimethylation
GO:0035066
IBA
GOA Databasepositive regulation of histone acetylation
GO:0035067
IBA
GOA Databasenegative regulation of histone acetylation
GO:0045717
IBA
GOA Databasenegative regulation of fatty acid biosynthetic process
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006974
IEA
InterProcellular response to DNA damage stimulus
GO:0007049
IEA
GOA Databasecell cycle
GO:0016567
IEA
GOA Databaseprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G04020
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0004842
IBA
GOA Databaseubiquitin-protein transferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0070531
IBA
GOA DatabaseBRCA1-A complex
GO:0031436
IBA
GOA DatabaseBRCA1-BARD1 complex
GO:0005886
IBA
GOA Databaseplasma membrane
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005694
IEA
GOA Databasechromosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR031099 BRCA1-associated
IPR018957 Zinc finger, C3HC4 RING-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR036420 BRCT domain superfamily
IPR001841 Zinc finger, RING-type
IPR001357 BRCT domain
Mapman id Description
14.3.1.1 DNA damage response.homologous recombination repair (HR).BRCA1-BARD1 DNA-damage response heterodimer.component BRCA1/BARD1