Gene: Solyc12g041980.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc12g041980.3
- Transcript Identifier Solyc12g041980.3.1
- Gene Type Coding gene
- Location SL4.0ch12 : 55499259-55501474 : negative
Gene Family Information
- ID HOM05D000001
- #Genes/#Species 35287/100
- Phylogenetic origin
- ID ORTHO05D002182
- #Genes/#Species 310/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc12g041980.3.1
- uniprot A0A3Q7JVU0
- gene_id Solyc12g041980
Descriptions
- Description Breast cancer associated RING 1 (AHRD V3.3 *-* A0A178W540_ARATH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006974 | IEA | InterPro | cellular response to DNA damage stimulus | |
| GO:0016567 | IEA | GOA Database | protein ubiquitination | |
| GO:0000724 | IBA | GOA Database | double-strand break repair via homologous recombination | |
| GO:0045944 | IBA | GOA Database | positive regulation of transcription by RNA polymerase II | |
| GO:0045717 | IBA | GOA Database | negative regulation of fatty acid biosynthetic process | |
| GO:0035067 | IBA | GOA Database | negative regulation of histone acetylation | |
| GO:0035066 | IBA | GOA Database | positive regulation of histone acetylation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0004842 | IBA | GOA Database | ubiquitin-protein transferase activity | |
| GO:0005515 | ISO | PLAZA Homology (enrichment) | protein binding | HOM05D000001 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005886 | IBA | GOA Database | plasma membrane | |
| GO:0031436 | IBA | GOA Database | BRCA1-BARD1 complex | |
| GO:0070531 | IBA | GOA Database | BRCA1-A complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 14.3.1.1 | DNA damage response.homologous recombination repair (HR).BRCA1-BARD1 DNA-damage response heterodimer.component BRCA1/BARD1 |