Gene: Sopen08g008190

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g008190
  • Transcript Identifier Sopen08g008190.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 15497580-15503476 : negative

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g008190.1

Descriptions

  • Description Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control. | breast cancer susceptibility1 (BRCA1) | FUNCTIONS IN: ubiquitin-protein ligase activity | INVOLVED IN: DNA repair, response to gamma radiation | LOCATED IN: intracellular, nucleus | EXPRESSED IN: 9 plant structures | EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , BRCA1 , Zinc finger, RING-type , Zinc finger, C3HC4 RING-type , BRCT | BEST Arabidopsis thaliana protein match is: breast cancer associated RING 1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006974
IEA
InterProcellular response to DNA damage stimulus
GO:0071480
ISO
PLAZA Integrative Orthologycellular response to gamma radiation AT4G21070
GO:0000724
ISO
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination AT4G21070
GO:0006310
ISO
PLAZA Integrative OrthologyDNA recombination AT4G21070
GO:0010332
ISO
PLAZA Integrative Orthologyresponse to gamma radiation AT4G21070

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
ISO
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT4G21070
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G21070

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G21070

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036420 BRCT domain superfamily
IPR001841 Zinc finger, RING-type
IPR001357 BRCT domain
IPR001965 Zinc finger, PHD-type
IPR031099 BRCA1-associated
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
14.3.1.1 DNA damage response.homologous recombination repair (HR).BRCA1-BARD1 DNA-damage response heterodimer.component BRCA1/BARD1