Gene: Solyc06g008210.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g008210.4
  • Transcript Identifier Solyc06g008210.4.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 2098375-2105391 : negative

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g008210.4.1
  • uniprot A0A3Q7GSA2
  • gene_id Solyc06g008210

Descriptions

  • Description Protein BREAST CANCER SUSCEPTIBILITY 1-like protein (AHRD V3.3 *** A0A1J3HZN2_NOCCA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010078
ISO
PLAZA Integrative Orthologymaintenance of root meristem identity AT1G04020
GO:0010332
ISO
PLAZA Integrative Orthologyresponse to gamma radiation AT4G21070
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT1G04020
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT1G04020
GO:0071480
ISO
PLAZA Integrative Orthologycellular response to gamma radiation AT4G21070
GO:0009934
ISO
PLAZA Integrative Orthologyregulation of meristem structural organization AT1G04020
GO:0006310
ISO
PLAZA Integrative OrthologyDNA recombination AT4G21070
GO:0065004
ISO
PLAZA Integrative Orthologyprotein-DNA complex assembly AT1G04020
GO:0010492
ISO
PLAZA Integrative Orthologymaintenance of shoot apical meristem identity AT1G04020
GO:0080182
ISO
PLAZA Integrative Orthologyhistone H3-K4 trimethylation AT1G04020
GO:0000724
IBA
GOA Databasedouble-strand break repair via homologous recombination
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0045944
IBA
GOA Databasepositive regulation of transcription by RNA polymerase II
GO:0045717
IBA
GOA Databasenegative regulation of fatty acid biosynthetic process
GO:0035067
IBA
GOA Databasenegative regulation of histone acetylation
GO:0035066
IBA
GOA Databasepositive regulation of histone acetylation
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006974
IEA
InterProcellular response to DNA damage stimulus
GO:0007049
IEA
GOA Databasecell cycle
GO:0016567
IEA
GOA Databaseprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G04020
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT1G04020
GO:0004842
IBA
GOA Databaseubiquitin-protein transferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
IBA
GOA Databaseplasma membrane
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G04020
GO:0031436
IBA
GOA DatabaseBRCA1-BARD1 complex
GO:0070531
IBA
GOA DatabaseBRCA1-A complex
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005694
IEA
GOA Databasechromosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR031099 BRCA1-associated
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001357 BRCT domain
IPR036420 BRCT domain superfamily
IPR001841 Zinc finger, RING-type
IPR018957 Zinc finger, C3HC4 RING-type
Mapman id Description
14.3.1.1 DNA damage response.homologous recombination repair (HR).BRCA1-BARD1 DNA-damage response heterodimer.component BRCA1/BARD1