Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12960 Brassica napus
A03p00370 Brassica napus
A03p52860 Brassica napus
A08p15030 Brassica napus
Aa31LG1G22890 Aethionema arabicum
Aa31LG6G3650 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5787 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5788 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2934 Anthoceros agrestis
Actinidia01895 Actinidia chinensis
Actinidia01896 Actinidia chinensis
Actinidia01897 Actinidia chinensis
Actinidia05370 Actinidia chinensis
Actinidia05613 Actinidia chinensis
Actinidia20727 Actinidia chinensis
Ah.14g089300 Amaranthus hybridus
AL6G10900 Arabidopsis lyrata
AL7G32300 Arabidopsis lyrata
Aqoxy1G02556 Aquilegia oxysepala
Aqoxy4G01071 Aquilegia oxysepala
Aqoxy4G02609 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.55XWXX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9SSZ5T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ECTA9H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VHJ8BK Arachis hypogaea
AT4G21670 Arabidopsis thaliana
AT5G01270 Arabidopsis thaliana
ATR0618G225 Amborella trichopoda
ATR0618G329 Amborella trichopoda
ATR0680G135 Amborella trichopoda
Atru.chr10.1942 Acer truncatum
Atru.chr10.1943 Acer truncatum
Atru.chr8.2221 Acer truncatum
AUR62014788 Chenopodium quinoa
AUR62016975 Chenopodium quinoa
AUR62043096 Chenopodium quinoa
BcaC01g00686 Brassica carinata
BcaC06g30671 Brassica carinata
BcaNung00845 Brassica carinata
BcaNung02771 Brassica carinata
BcaNung06531 Brassica carinata
BolC1t01513H Brassica oleracea
BolC3t12619H Brassica oleracea
BolC3t20596H Brassica oleracea
BolC7t45630H Brassica oleracea
BraA01t01240Z Brassica rapa
BraA03t09428Z Brassica rapa
BraA03t14362Z Brassica rapa
BraA08t33485Z Brassica rapa
C01p15610 Brassica napus
C03p00530 Brassica napus
C03p04730 Brassica napus
C03p83130 Brassica napus
C07p51300 Brassica napus
CAN.G1593.2 Capsicum annuum
CAN.G1627.11 Capsicum annuum
CAN.G2.12 Capsicum annuum
CAN.G242.11 Capsicum annuum
CAN.G772.2 Capsicum annuum
CANSAT35G0407 Cannabis sativa
CANSAT35G1545 Cannabis sativa
CARHR211610 Cardamine hirsuta
CARHR228390 Cardamine hirsuta
Carub.0006s0061 Capsella rubella
Carub.0007s1974 Capsella rubella
Ca_07626_v3 Cicer arietinum L.
Ca_18528_v3 Cicer arietinum L.
CBR_g13033 Chara braunii
Cc02_g13040 Coffea canephora
Cc06_g01480 Coffea canephora
CDE01G0026 Ceratophyllum demersum
CDE02G0131 Ceratophyllum demersum
CDE07G1093 Ceratophyllum demersum
Cfa000412 Carpinus fangiana
Cfa017219 Carpinus fangiana
Cfa017220 Carpinus fangiana
Ciclev10011105m.g Citrus clementina
Ciclev10014168m.g Citrus clementina
CiPaw.09G057000 Carya illinoinensis
CiPaw.09G057100 Carya illinoinensis
CiPaw.09G208000 Carya illinoinensis
CiPaw.10G046800 Carya illinoinensis
ClCG01G022810 Citrullus lanatus
COL.COLO4_14550 Corchorus olitorius
COL.COLO4_14551 Corchorus olitorius
COL.COLO4_31506 Corchorus olitorius
Cpa.g.sc163.15 Carica papaya
Cpa.g.sc163.16 Carica papaya
Cpa.g.sc163.17 Carica papaya
Cpa.g.sc27.71 Carica papaya
Cpa.g.sc27.72 Carica papaya
Cre06.g280500 Chlamydomonas reinhardtii
CsaV3_4G026160 Cucumis sativus L.
CsaV3_6G049980 Cucumis sativus L.
CSS0002582 Camellia sinensis var. sinensis
CSS0012849 Camellia sinensis var. sinensis
DCAR_003935 Daucus carota
DCAR_009397 Daucus carota
DCAR_015430 Daucus carota
DCAR_028109 Daucus carota
DCAR_028839 Daucus carota
Dinv03586 Davidia involucrata
Dinv07534 Davidia involucrata
Dinv40535 Davidia involucrata
Duzib093G1506 Durio zibethinus
Duzib106G1266 Durio zibethinus
Duzib128G0431 Durio zibethinus
Duzib151G1149 Durio zibethinus
Duzib160G0447 Durio zibethinus
Duzib235G0094 Durio zibethinus
ECA236G0114 Erigeron canadensis
ECA247G0839 Erigeron canadensis
ECA247G2207 Erigeron canadensis
EL10Ac8g19498 Beta vulgaris
EL10Ac8g20342 Beta vulgaris
Eucgr.E03350 Eucalyptus grandis
Eucgr.K02984 Eucalyptus grandis
Eucgr.K02985 Eucalyptus grandis
Eucgr.K02986 Eucalyptus grandis
FAN02G0732 Fragaria x ananassa
FAN05G0150 Fragaria x ananassa
FAN05G3485 Fragaria x ananassa
FAN09G2687 Fragaria x ananassa
FAN11G2695 Fragaria x ananassa
FAN12G4182 Fragaria x ananassa
FAN14G2165 Fragaria x ananassa
FAN14G4062 Fragaria x ananassa
FAN16G1429 Fragaria x ananassa
FAN21G1933 Fragaria x ananassa
FAN25G0477 Fragaria x ananassa
FvH4_3g04830 Fragaria vesca
FvH4_3g20320 Fragaria vesca
FvH4_6g11640 Fragaria vesca
Glyma.07G148100 Glycine max
Glyma.07G194800 Glycine max
Glyma.13G181700 Glycine max
Glyma.13G241400 Glycine max
Glyma.15G072000 Glycine max
Glyma.18G199400 Glycine max
Gohir.A01G228100 Gossypium hirsutum
Gohir.A06G209900 Gossypium hirsutum
Gohir.A06G210101 Gossypium hirsutum
Gohir.A10G023900 Gossypium hirsutum
Gohir.D01G217900 Gossypium hirsutum
Gohir.D06G211100 Gossypium hirsutum
Gohir.D10G024600 Gossypium hirsutum
Gorai.002G264300 Gossypium raimondii
Gorai.010G255100 Gossypium raimondii
Gorai.010G255200 Gossypium raimondii
Gorai.011G025900 Gossypium raimondii
GSVIVG01006447001 Vitis vinifera
GSVIVG01033975001 Vitis vinifera
HanXRQChr04g0124171 Helianthus annuus
HanXRQChr05g0152731 Helianthus annuus
HanXRQChr10g0301091 Helianthus annuus
HanXRQChr11g0331251 Helianthus annuus
HanXRQChr13g0425011 Helianthus annuus
HanXRQChr15g0464031 Helianthus annuus
HanXRQChr15g0482511 Helianthus annuus
HanXRQChr16g0498281 Helianthus annuus
Haze_06503 Corylus avellana
Haze_20983 Corylus avellana
Haze_20984 Corylus avellana
Haze_20988 Corylus avellana
Hma1.2p1_0362F.1_g136100 Hydrangea macrophylla
HPP92_003412 Vanilla planifolia
HPP92_007330 Vanilla planifolia
HPP92_007340 Vanilla planifolia
HPP92_007341 Vanilla planifolia
Hund21246 Selenicereus undatus
Hund22325 Selenicereus undatus
Hund23699 Selenicereus undatus
Lalb_Chr05g0218371 Lupinus albus
Lalb_Chr16g0383611 Lupinus albus
Lalb_Chr19g0124711 Lupinus albus
Lalb_Chr20g0122001 Lupinus albus
Lj1g0021513 Lotus japonicus
Lj2A76T82 Lonicera japonica
Lj2C286T11 Lonicera japonica
Lj2C76T15 Lonicera japonica
Lj4g0027648 Lotus japonicus
Lsat_1_v5_gn_1_16001 Lactuca sativa
Lsat_1_v5_gn_7_19061 Lactuca sativa
Lsat_1_v5_gn_9_33761 Lactuca sativa
Manes.09G104300 Manihot esculenta
Manes.16G025300 Manihot esculenta
Manes.17G043100 Manihot esculenta
Mapoly0125s0035 Marchantia polymorpha
MBI14_g28266_MAGBIO Magnolia biondii
MCO09G514 Micromonas commoda
MD04G1150600 Malus domestica
MD04G1150700 Malus domestica
MD05G1316500 Malus domestica
MD10G1297000 Malus domestica
MD12G1164700 Malus domestica
Medtr4g089000 Medicago truncatula
Medtr4g089010 Medicago truncatula
Medtr7g067540 Medicago truncatula
MELO3C003243.2 Cucumis melo
MELO3C007299.2 Cucumis melo
Migut.H01509 Erythranthe guttata
Migut.J00183 Erythranthe guttata
Migut.M01186 Erythranthe guttata
MSTRG.14683 Avicennia marina
MSTRG.19018 Avicennia marina
MSTRG.5584 Avicennia marina
MSTRG.7306 Avicennia marina
Nitab4.5_0000335g0130 Nicotiana tabacum
Nitab4.5_0003668g0090 Nicotiana tabacum
Nitab4.5_0008420g0010 Nicotiana tabacum
Nitab4.5_0012352g0020 Nicotiana tabacum
Nn1g03254 Nelumbo nucifera
Nn1g04013 Nelumbo nucifera
Nn1g06613 Nelumbo nucifera
Nn1g06614 Nelumbo nucifera
Nn2g11449 Nelumbo nucifera
Nn2g14631 Nelumbo nucifera
Nn7g36717 Nelumbo nucifera
Oeu014699.1 Olea europaea
Oeu043701.2 Olea europaea
Oeu055168.1 Olea europaea
Oeu064510.1 Olea europaea
Os01g0857000 Oryza sativa ssp. japonica
Os02g0639000 Oryza sativa ssp. japonica
Os04g0529500 Oryza sativa ssp. japonica
Peaxi162Scf00141g00338 Petunia axillaris
Peaxi162Scf00379g00054 Petunia axillaris
PGR004G2712 Punica granatum
PGR042G1575 Punica granatum
PGSC0003DMG400022380 Solanum tuberosum
PGSC0003DMG401008494 Solanum tuberosum
PGSC0003DMG402008494 Solanum tuberosum
Phvul.002G226900 Phaseolus vulgaris
Phvul.008G105400 Phaseolus vulgaris
Potri.004G040000 Populus trichocarpa
Potri.006G099302 Populus trichocarpa
Potri.006G099402 Populus trichocarpa
Potri.011G049400 Populus trichocarpa
Potri.016G114600 Populus trichocarpa
Pp3c11_20840 Physcomitrium patens
Pp3c7_6260 Physcomitrium patens
Prupe.4G043500 Prunus persica
Prupe.6G275400 Prunus persica
Psat3g130000 Pisum sativum
Psat7g113080 Pisum sativum
PSO384G2491 Papaver somniferum
PSO384G4939 Papaver somniferum
PSO541G5777 Papaver somniferum
PSO675G8102 Papaver somniferum
QL05p039486 Quercus lobata
RcHm_v2.0_Chr3g0463301 Rosa chinensis
RcHm_v2.0_Chr5g0007991 Rosa chinensis
RcHm_v2.0_Chr5g0083781 Rosa chinensis
Rhsim02G0127000 Rhododendron simsii
Rhsim04G0128700 Rhododendron simsii
Rhsim04G0128900 Rhododendron simsii
Sabra06G0076100 Salix brachista
Sabra11G0033900 Salix brachista
SalBow5G3383 Salvia bowleyana
SalBow7G4808 Salvia bowleyana
SalBow8G5259 Salvia bowleyana
Sc17g0006300 Simmondsia chinensis
Sc22g0002430 Simmondsia chinensis
Sed0006268 Sechium edule
Sed0007844 Sechium edule
Sed0016039 Sechium edule
Sed0024319 Sechium edule
SEGI_06844 Sequoiadendron giganteum
SEGI_14159 Sequoiadendron giganteum
SEGI_18717 Sequoiadendron giganteum
SGA_v2.0_scaffold58G20396 Striga asiatica
SGA_v2.0_scaffold58G20399 Striga asiatica
SGA_v2.0_scaffold7G03978 Striga asiatica
SGA_v2.0_scaffold85G26748 Striga asiatica
SHI01813 Sapria himalayana
SHI12827 Sapria himalayana
SHI12829 Sapria himalayana
SMO145G0098 Selaginella moellendorffii
Solyc02g078550.3 Solanum lycopersicum
Solyc09g014440.4 Solanum lycopersicum
Sopen02g023400 Solanum pennellii
Sopen09g007250 Solanum pennellii
Sp6g40600 Schrenkiella parvula
Sp7g19780 Schrenkiella parvula
TAR371G1286 Trochodendron aralioides
TAR623G1197 Trochodendron aralioides
TAR627G0551 Trochodendron aralioides
TAR633G2470 Trochodendron aralioides
THA.LOC104806283 Tarenaya hassleriana
THA.LOC104812840 Tarenaya hassleriana
THA.LOC104816210 Tarenaya hassleriana
THA.LOC104816651 Tarenaya hassleriana
Thecc.05G017900 Theobroma cacao
Thecc.06G191200 Theobroma cacao
Thhalv10012754m.g Eutrema salsugineum
Thhalv10024324m.g Eutrema salsugineum
TPR.G11981 Trifolium pratense
TPR.G31896 Trifolium pratense
TPR.G8126 Trifolium pratense
TWI38G1276 Tripterygium wilfordii
TWI53G0360 Tripterygium wilfordii
TWI63G0661 Tripterygium wilfordii
unitig_22.g6591 Utricularia gibba
unitig_26.g9370 Utricularia gibba
vmacro08853 Vaccinium macrocarpon
vmacro15893 Vaccinium macrocarpon
VMungo0251G1624 Vigna mungo
VMungo1383G2015 Vigna mungo
Zm00001eb022020 Zea mays
Zm00001eb147420 Zea mays
Zm00001eb185700 Zea mays
Zm00001eb248450 Zea mays

User provided reference genes

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