Gene: AT5G01270

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G01270
  • Transcript Identifier AT5G01270.1
  • Gene Type Coding gene
  • Location Chr5 : 108163-112143 : negative

Gene Family Information

  • ID HOM05D002149
  • #Genes/#Species 312/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G01270.1
  • symbol CPL2
  • Alias ATCPL2
  • uniprot Q5YDB5

Descriptions

  • Description carboxyl-terminal domain (ctd) phosphatase-like 2
  • Computational description carboxyl-terminal domain (ctd) phosphatase-like 2 (CPL2); FUNCTIONS IN: double-stranded RNA binding, phosphatase activity; INVOLVED IN: response to auxin stimulus, response to osmotic stress, developmental growth; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: C-terminal domain phosphatase-like 1 (TAIR:AT4G21670.1); Has 234 Blast hits to 223 proteins in 82 species: Archae - 0; Bacteria - 8; Metazoa - 40; Fungi - 61; Plants - 110; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048589
IMP
Gene Ontologydevelopmental growth1
GO:0070940
IBA
IEA
Gene Ontologydephosphorylation of RNA polymerase II C-terminal domain2
GO:0070940
IEA
InterProdephosphorylation of RNA polymerase II C-terminal domain
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0009734
IMP
Gene Ontologyauxin-activated signaling pathway1
GO:0045893
IMP
Gene Ontologypositive regulation of transcription, DNA-templated1
GO:0009733
IMP
Gene Ontologyresponse to auxin1
GO:0006970
IMP
Gene Ontologyresponse to osmotic stress1
GO:0010025
IMP
Gene Ontologywax biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008420
IBA
IEA
Gene OntologyRNA polymerase II CTD heptapeptide repeat phosphatase activity2
GO:0008420
IEA
InterProRNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004722
IEA
GOA Databaseprotein serine/threonine phosphatase activity
GO:0004647
IDA
GOA Databasephosphoserine phosphatase activity
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0016791
IDA
Gene Ontologyphosphatase activity1
GO:0036424
IDA
Gene OntologyL-phosphoserine phosphatase activity1
GO:0106307
IEA
Gene Ontologyprotein threonine phosphatase activity
GO:0106306
IEA
Gene Ontologyprotein serine phosphatase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus4
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023214 HAD superfamily
IPR004274 FCP1 homology domain
IPR014720 Double-stranded RNA-binding domain
IPR039189 CTD phosphatase Fcp1
IPR036412 HAD-like superfamily
Mapman id Description
15.3.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.group-I phosphatase
18.4.26.1.5 Protein modification.phosphorylation.protein aspartate phosphatase superfamily.FCP phosphatase families.subcluster H/CPL1-2 phosphatase