Gene: AT4G21670

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G21670
  • Transcript Identifier AT4G21670.1
  • Gene Type Coding gene
  • Location Chr4 : 11511511-11516922 : positive

Gene Family Information

  • ID HOM05D002149
  • #Genes/#Species 312/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G21670.1
  • symbol CPL1
  • Alias ATCPL1,C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1,FRY2,FIERY 2,RCF2,regulators of C-REPEAT BINDING FACTOR (CBF) gene expression 2,SHI4,SHINY 4
  • uniprot Q5YDB6

Descriptions

  • Description C-terminal domain phosphatase-like 1
  • Computational description C-terminal domain phosphatase-like 1 (CPL1); FUNCTIONS IN: double-stranded RNA binding, phosphatase activity, nucleotide phosphatase activity; INVOLVED IN: abscisic acid mediated signaling pathway, negative regulation of transcription, response to abiotic stimulus; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: carboxyl-terminal domain (ctd) phosphatase-like 2 (TAIR:AT5G01270.2); Has 330 Blast hits to 317 proteins in 105 species: Archae - 0; Bacteria - 31; Metazoa - 57; Fungi - 81; Plants - 112; Viruses - 1; Other Eukaryotes - 48 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070940
IEA
GOA Databasedephosphorylation of RNA polymerase II C-terminal domain
GO:0070940
IBA
Gene Ontologydephosphorylation of RNA polymerase II C-terminal domain1
GO:0070940
IEA
InterProdephosphorylation of RNA polymerase II C-terminal domain
GO:0000184
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0009738
IEA
GOA Databaseabscisic acid-activated signaling pathway
GO:0009738
IMP
Gene Ontologyabscisic acid-activated signaling pathway2
GO:0009611
IMP
Gene Ontologyresponse to wounding3
GO:0045892
IMP
Gene Ontologynegative regulation of transcription, DNA-templated2
GO:0009651
IMP
Gene Ontologyresponse to salt stress2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008420
IEA
GOA DatabaseRNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0008420
IBA
Gene OntologyRNA polymerase II CTD heptapeptide repeat phosphatase activity1
GO:0008420
IEA
InterProRNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004722
IEA
GOA Databaseprotein serine/threonine phosphatase activity
GO:0004647
IDA
GOA Databasephosphoserine phosphatase activity
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0016791
IDA
Gene Ontologyphosphatase activity5
GO:0036424
IDA
Gene OntologyL-phosphoserine phosphatase activity5
GO:0004721
IDA
Gene Ontologyphosphoprotein phosphatase activity2
GO:0106307
IEA
Gene Ontologyprotein threonine phosphatase activity
GO:0106306
IEA
Gene Ontologyprotein serine phosphatase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus6
GO:0016607
IEA
GOA Databasenuclear speck

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004274 FCP1 homology domain
IPR014720 Double-stranded RNA-binding domain
IPR036412 HAD-like superfamily
IPR039189 CTD phosphatase Fcp1
IPR023214 HAD superfamily
Mapman id Description
15.3.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.group-I phosphatase
18.4.26.1.5 Protein modification.phosphorylation.protein aspartate phosphatase superfamily.FCP phosphatase families.subcluster H/CPL1-2 phosphatase