Gene: Sopen09g007250

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g007250
  • Transcript Identifier Sopen09g007250.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 6405296-6415313 : negative

Gene Family Information

  • ID HOM05D002149
  • #Genes/#Species 312/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g007250.1

Descriptions

  • Description Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | carboxyl-terminal domain (ctd) phosphatase-like 2 (CPL2) | FUNCTIONS IN: double-stranded RNA binding, phosphatase activity | INVOLVED IN: response to auxin stimulus, response to osmotic stress, developmental growth | LOCATED IN: intracellular | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding , Double-stranded RNA-binding-like , NLI interacting factor | BEST Arabidopsis thaliana protein match is: C-terminal domain phosphatase-like 1 .
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070940
IEA
InterProdephosphorylation of RNA polymerase II C-terminal domain
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT5G01270
GO:0006970
ISO
PLAZA Integrative Orthologyresponse to osmotic stress AT5G01270
GO:0048589
ISO
PLAZA Integrative Orthologydevelopmental growth AT5G01270
GO:0009734
ISO
PLAZA Integrative Orthologyauxin-activated signaling pathway AT5G01270
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT5G01270
GO:0010025
ISO
PLAZA Integrative Orthologywax biosynthetic process AT5G01270

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008420
IEA
InterProRNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0004647
ISO
PLAZA Integrative Orthologyphosphoserine phosphatase activity AT5G01270
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G01270
GO:0016791
ISO
PLAZA Integrative Orthologyphosphatase activity AT5G01270
GO:0036424
ISO
PLAZA Integrative OrthologyL-phosphoserine phosphatase activity AT5G01270

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G01270
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G01270

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014720 Double-stranded RNA-binding domain
IPR004274 FCP1 homology domain
IPR036412 HAD-like superfamily
IPR023214 HAD superfamily
IPR039189 CTD phosphatase Fcp1
Mapman id Description
15.3.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.group-I phosphatase
18.4.26.1.5 Protein modification.phosphorylation.protein aspartate phosphatase superfamily.FCP phosphatase families.subcluster H/CPL1-2 phosphatase