Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p38470 Brassica napus
A03p21650 Brassica napus
A04p05270 Brassica napus
A05p18800 Brassica napus
A06p01660 Brassica napus
A07p22150 Brassica napus
A09p47520 Brassica napus
Aa31LG10G2300 Aethionema arabicum
Aa31LG5G20870 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4837 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4843 Anthoceros agrestis
Actinidia07443 Actinidia chinensis
Actinidia08819 Actinidia chinensis
Actinidia16004 Actinidia chinensis
Actinidia19974 Actinidia chinensis
Actinidia22021 Actinidia chinensis
Actinidia26416 Actinidia chinensis
Actinidia40440 Actinidia chinensis
Ah.01g020950 Amaranthus hybridus
Ah.02g111350 Amaranthus hybridus
AL1G61060 Arabidopsis lyrata
AL3G28240 Arabidopsis lyrata
AL4G36110 Arabidopsis lyrata
AL5G35640 Arabidopsis lyrata
AL7G43240 Arabidopsis lyrata
Aqoxy2G03494 Aquilegia oxysepala
Aqoxy5G00376 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.D7N80J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FT13IX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FUQ01W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q86WCF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W67DNC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZX5C9C Arachis hypogaea
AT1G52740 Arabidopsis thaliana
AT2G38810 Arabidopsis thaliana
AT3G54560 Arabidopsis thaliana
ATR0681G240 Amborella trichopoda
Atru.chr1.3152 Acer truncatum
Atru.chr2.641 Acer truncatum
Atru.chr5.1545 Acer truncatum
Atru.chr7.1251 Acer truncatum
AUR62011586 Chenopodium quinoa
AUR62011959 Chenopodium quinoa
AUR62016399 Chenopodium quinoa
AUR62032272 Chenopodium quinoa
BcaB01g00177 Brassica carinata
BcaB02g07733 Brassica carinata
BcaB02g08447 Brassica carinata
BcaB04g17140 Brassica carinata
BcaC01g01339 Brassica carinata
BcaC02g09060 Brassica carinata
BcaC04g21044 Brassica carinata
BcaC07g39809 Brassica carinata
BcaC07g39810 Brassica carinata
BcaC08g43448 Brassica carinata
BcaC08g44015 Brassica carinata
BcaC08g44687 Brassica carinata
BcaC09g48529 Brassica carinata
BolC1t04835H Brassica oleracea
BolC3t14951H Brassica oleracea
BolC3t21408H Brassica oleracea
BolC4t25371H Brassica oleracea
BolC6t35900H Brassica oleracea
BolC6t36602H Brassica oleracea
BolC6t37407H Brassica oleracea
BolC9t56469H Brassica oleracea
BraA01t03897Z Brassica rapa
BraA03t11400Z Brassica rapa
BraA05t20777Z Brassica rapa
BraA06t23384Z Brassica rapa
BraA07t29898Z Brassica rapa
C01p48800 Brassica napus
C03p25630 Brassica napus
C03p90880 Brassica napus
C04p37970 Brassica napus
C06p08190 Brassica napus
C06p14260 Brassica napus
C06p22210 Brassica napus
C08p29730 Brassica napus
C09p36310 Brassica napus
CAN.G713.7 Capsicum annuum
CAN.G771.10 Capsicum annuum
CAN.G974.1 Capsicum annuum
CANSAT25G1272 Cannabis sativa
CANSAT25G1644 Cannabis sativa
CANSAT56G1715 Cannabis sativa
CARHR042880 Cardamine hirsuta
CARHR090690 Cardamine hirsuta
CARHR133520 Cardamine hirsuta
CARHR164470 Cardamine hirsuta
Carub.0001s4182 Capsella rubella
Carub.0003s1535 Capsella rubella
Carub.0004s2083 Capsella rubella
Carub.0005s2118 Capsella rubella
Ca_09719_v3 Cicer arietinum L.
Ca_12925_v3 Cicer arietinum L.
Ca_21713_v3 Cicer arietinum L.
CBR_g19670 Chara braunii
Cc01_g18930 Coffea canephora
Cc04_g03840 Coffea canephora
Cc06_g09060 Coffea canephora
CDE01G0128 Ceratophyllum demersum
CDE02G1454 Ceratophyllum demersum
CDE02G3104 Ceratophyllum demersum
CDE05G2933 Ceratophyllum demersum
Cfa002312 Carpinus fangiana
Cfa003322 Carpinus fangiana
Cfa013191 Carpinus fangiana
Ciclev10010700m.g Citrus clementina
Ciclev10022798m.g Citrus clementina
Ciclev10026746m.g Citrus clementina
CiPaw.03G238800 Carya illinoinensis
CiPaw.03G256100 Carya illinoinensis
CiPaw.04G168600 Carya illinoinensis
CiPaw.04G181100 Carya illinoinensis
CiPaw.07G088400 Carya illinoinensis
CiPaw.07G219900 Carya illinoinensis
ClCG07G000560 Citrullus lanatus
ClCG09G002550 Citrullus lanatus
COL.COLO4_06097 Corchorus olitorius
COL.COLO4_12867 Corchorus olitorius
COL.COLO4_34984 Corchorus olitorius
Cpa.g.c33360.1 Carica papaya
Cpa.g.c35313 Carica papaya
Cpa.g.sc1247.2 Carica papaya
Cpa.g.sc75.78 Carica papaya
Cre13.g567700 Chlamydomonas reinhardtii
CsaV3_2G013770 Cucumis sativus L.
CsaV3_7G032770 Cucumis sativus L.
CSS0000731 Camellia sinensis var. sinensis
CSS0002291 Camellia sinensis var. sinensis
CSS0021180 Camellia sinensis var. sinensis
CSS0021610 Camellia sinensis var. sinensis
CSS0044775 Camellia sinensis var. sinensis
CSS0047967 Camellia sinensis var. sinensis
DCAR_002691 Daucus carota
DCAR_005852 Daucus carota
DCAR_012510 Daucus carota
DCAR_018440 Daucus carota
DCAR_025469 Daucus carota
Dinv11603 Davidia involucrata
Dinv22490 Davidia involucrata
Dinv30556 Davidia involucrata
Dinv34557 Davidia involucrata
Dinv38081 Davidia involucrata
Dinv41549 Davidia involucrata
Duzib133G0622 Durio zibethinus
Duzib138G0926 Durio zibethinus
Duzib160G0064 Durio zibethinus
Duzib168G1021 Durio zibethinus
Duzib187G0118 Durio zibethinus
Duzib192G0508 Durio zibethinus
Duzib211G0256 Durio zibethinus
Duzib235G0184 Durio zibethinus
ECA234G2675 Erigeron canadensis
ECA247G0317 Erigeron canadensis
ECA248G1123 Erigeron canadensis
EL10Ac5g10481 Beta vulgaris
EL10Ac9g21960 Beta vulgaris
Eucgr.J03033 Eucalyptus grandis
Eucgr.K03318 Eucalyptus grandis
FAN15G3447 Fragaria x ananassa
FAN19G0961 Fragaria x ananassa
FAN20G0934 Fragaria x ananassa
FAN23G2787 Fragaria x ananassa
FAN24G0976 Fragaria x ananassa
FAN26G1851 Fragaria x ananassa
FAN27G0375 Fragaria x ananassa
FAN28G2569 Fragaria x ananassa
FvH4_1g04010 Fragaria vesca
FvH4_2g22780 Fragaria vesca
Glyma.02G143200 Glycine max
Glyma.03G158100 Glycine max
Glyma.04G149200 Glycine max
Glyma.06G071500 Glycine max
Glyma.06G214900 Glycine max
Glyma.10G031200 Glycine max
Glyma.14G126700 Glycine max
Glyma.17G207100 Glycine max
Glyma.19G160400 Glycine max
Gohir.A02G123700 Gossypium hirsutum
Gohir.A05G124400 Gossypium hirsutum
Gohir.A07G208100 Gossypium hirsutum
Gohir.A08G187600 Gossypium hirsutum
Gohir.A09G084700 Gossypium hirsutum
Gohir.A11G126300 Gossypium hirsutum
Gohir.A12G039550 Gossypium hirsutum
Gohir.A13G198200 Gossypium hirsutum
Gohir.D03G065900 Gossypium hirsutum
Gohir.D05G125400 Gossypium hirsutum
Gohir.D07G214100 Gossypium hirsutum
Gohir.D08G205900 Gossypium hirsutum
Gohir.D09G084600 Gossypium hirsutum
Gohir.D11G131900 Gossypium hirsutum
Gohir.D13G027601 Gossypium hirsutum
Gohir.D13G203700 Gossypium hirsutum
Gorai.001G242100 Gossypium raimondii
Gorai.002G056500 Gossypium raimondii
Gorai.004G217900 Gossypium raimondii
Gorai.006G100600 Gossypium raimondii
Gorai.007G141000 Gossypium raimondii
Gorai.009G129400 Gossypium raimondii
Gorai.011G205500 Gossypium raimondii
Gorai.013G232500 Gossypium raimondii
GSVIVG01003139001 Vitis vinifera
GSVIVG01017218001 Vitis vinifera
GSVIVG01035768001 Vitis vinifera
HanXRQChr03g0062201 Helianthus annuus
HanXRQChr04g0096801 Helianthus annuus
HanXRQChr06g0177901 Helianthus annuus
HanXRQChr09g0238461 Helianthus annuus
HanXRQChr10g0282161 Helianthus annuus
HanXRQChr15g0466941 Helianthus annuus
Haze_21587 Corylus avellana
Haze_24518 Corylus avellana
Haze_25640 Corylus avellana
Haze_25645 Corylus avellana
Haze_26098 Corylus avellana
Hma1.2p1_0172F.1_g076110 Hydrangea macrophylla
Hma1.2p1_0317F.1_g123410 Hydrangea macrophylla
Hma1.2p1_0515F.1_g170340 Hydrangea macrophylla
Hma1.2p1_0760F.1_g214200 Hydrangea macrophylla
HPP92_010053 Vanilla planifolia
HPP92_010067 Vanilla planifolia
HPP92_014054 Vanilla planifolia
HPP92_024133 Vanilla planifolia
Hund00566 Selenicereus undatus
Hund02869 Selenicereus undatus
Hund06590 Selenicereus undatus
Lalb_Chr02g0142461 Lupinus albus
Lalb_Chr06g0162721 Lupinus albus
Lalb_Chr08g0234891 Lupinus albus
Lalb_Chr11g0072021 Lupinus albus
Lalb_Chr13g0302151 Lupinus albus
Lj1C56T17 Lonicera japonica
Lj1g0005530 Lotus japonicus
Lj1g0019352 Lotus japonicus
Lj2P1162T17 Lonicera japonica
Lj4g0024784 Lotus japonicus
Lj5C67T14 Lonicera japonica
Lj5g0001392 Lotus japonicus
Lj5g0020874 Lotus japonicus
Lj7P716T42 Lonicera japonica
Lj9P503T17 Lonicera japonica
LjContig00088g0013125 Lotus japonicus
Lsat_1_v5_gn_0_37460 Lactuca sativa
Lsat_1_v5_gn_1_33720 Lactuca sativa
Lsat_1_v5_gn_4_2000 Lactuca sativa
Lsat_1_v5_gn_5_132800 Lactuca sativa
Lsat_1_v5_gn_5_185180 Lactuca sativa
Lsat_1_v5_gn_5_97461 Lactuca sativa
Lsat_1_v5_gn_8_94420 Lactuca sativa
Manes.01G202800 Manihot esculenta
Manes.03G018100 Manihot esculenta
Manes.04G118600 Manihot esculenta
Manes.05G083000 Manihot esculenta
Manes.06G051000 Manihot esculenta
Manes.11G049100 Manihot esculenta
Manes.14G128100 Manihot esculenta
Mapoly0036s0142 Marchantia polymorpha
Mapoly0046s0057 Marchantia polymorpha
MBI01_g28176_MAGBIO Magnolia biondii
MBI11_g26136_MAGBIO Magnolia biondii
MCO13G473 Micromonas commoda
MCO13G474 Micromonas commoda
MD00G1025700 Malus domestica
MD03G1256100 Malus domestica
MD11G1276900 Malus domestica
MD15G1178500 Malus domestica
Medtr1g011750 Medicago truncatula
Medtr1g011850 Medicago truncatula
Medtr1g071040 Medicago truncatula
Medtr1g114050 Medicago truncatula
Medtr4g048490 Medicago truncatula
MELO3C014317.2 Cucumis melo
MELO3C023389.2 Cucumis melo
Migut.A00303 Erythranthe guttata
Migut.D00345 Erythranthe guttata
MSTRG.11758 Avicennia marina
MSTRG.13990 Avicennia marina
MSTRG.1642 Avicennia marina
MSTRG.17469 Avicennia marina
MSTRG.18277 Avicennia marina
MSTRG.21517 Avicennia marina
MSTRG.25858 Avicennia marina
Nitab4.5_0000187g0050 Nicotiana tabacum
Nitab4.5_0001044g0070 Nicotiana tabacum
Nitab4.5_0003235g0030 Nicotiana tabacum
Nitab4.5_0004899g0120 Nicotiana tabacum
Nitab4.5_0006991g0010 Nicotiana tabacum
Nitab4.5_0009698g0010 Nicotiana tabacum
Nn1g02514 Nelumbo nucifera
Nn2g11914 Nelumbo nucifera
Nn3g19468 Nelumbo nucifera
Nn5g28970 Nelumbo nucifera
Nn6g34405 Nelumbo nucifera
Nn8g39348 Nelumbo nucifera
Oeu011514.2 Olea europaea
Oeu025778.1 Olea europaea
Oeu031741.1 Olea europaea
Oeu035414.1 Olea europaea
Oeu045193.1 Olea europaea
Os03g0162200 Oryza sativa ssp. japonica
Os03g0743400 Oryza sativa ssp. japonica
Os10g0418000 Oryza sativa ssp. japonica
Peaxi162Scf00165g00021 Petunia axillaris
Peaxi162Scf00170g00320 Petunia axillaris
Peaxi162Scf00515g00048 Petunia axillaris
Peaxi162Scf00608g00918 Petunia axillaris
PGR031G1919 Punica granatum
PGR044G0469 Punica granatum
PGR044G1717 Punica granatum
PGR142G0111 Punica granatum
PGSC0003DMG400001065 Solanum tuberosum
PGSC0003DMG400019306 Solanum tuberosum
PGSC0003DMG401020138 Solanum tuberosum
Phvul.001G155700 Phaseolus vulgaris
Phvul.007G176000 Phaseolus vulgaris
Phvul.009G199100 Phaseolus vulgaris
Potri.002G046400 Populus trichocarpa
Potri.005G216600 Populus trichocarpa
Potri.006G249300 Populus trichocarpa
Potri.006G249400 Populus trichocarpa
Potri.018G032000 Populus trichocarpa
Potri.018G032100 Populus trichocarpa
Pp3c12_17610 Physcomitrium patens
Pp3c3_27030 Physcomitrium patens
Pp3c4_14220 Physcomitrium patens
PRCOL_00003478 Prasinoderma coloniale
Prupe.1G472200 Prunus persica
Prupe.7G236800 Prunus persica
Prupe.8G233200 Prunus persica
Psat4g042040 Pisum sativum
Psat6g029960 Pisum sativum
Psat6g058160 Pisum sativum
PSO210G7111 Papaver somniferum
PSO210G7411 Papaver somniferum
PSO461G0021 Papaver somniferum
PSO832G3189 Papaver somniferum
QL02p023374 Quercus lobata
QL02p087065 Quercus lobata
QL12p042515 Quercus lobata
RcHm_v2.0_Chr2g0089481 Rosa chinensis
RcHm_v2.0_Chr6g0289701 Rosa chinensis
RcHm_v2.0_Chr6g0298761 Rosa chinensis
Rhsim01G0088100 Rhododendron simsii
Rhsim01G0271200 Rhododendron simsii
Rhsim12G0194800 Rhododendron simsii
Rhsim13G0030100 Rhododendron simsii
RhsimUnG0045900 Rhododendron simsii
Sabra02G0037400 Salix brachista
Sabra05G0166100 Salix brachista
Sabra06G0195100 Salix brachista
Sabra06G0195200 Salix brachista
Sabra18G0032900 Salix brachista
Sabra18G0033000 Salix brachista
SalBow4G1847 Salvia bowleyana
SalBow4G2154 Salvia bowleyana
SalBow8G1748 Salvia bowleyana
Sc05g0001100 Simmondsia chinensis
Sc09g0007010 Simmondsia chinensis
Sc12g0008940 Simmondsia chinensis
Sed0000277 Sechium edule
Sed0013313 Sechium edule
Sed0021925 Sechium edule
SEGI_04027 Sequoiadendron giganteum
SEGI_07286 Sequoiadendron giganteum
SEGI_07295 Sequoiadendron giganteum
SEGI_16983 Sequoiadendron giganteum
SEGI_31565 Sequoiadendron giganteum
SEGI_36743 Sequoiadendron giganteum
SEGI_40364 Sequoiadendron giganteum
SGA_v2.0_scaffold138G35292 Striga asiatica
SGA_v2.0_scaffold1G00548 Striga asiatica
SGA_v2.0_scaffold22G09941 Striga asiatica
SGA_v2.0_scaffold4G02194 Striga asiatica
SHI11080 Sapria himalayana
SMO116G0422 Selaginella moellendorffii
SMO266G0079 Selaginella moellendorffii
Solyc06g084090.4 Solanum lycopersicum
Solyc09g065755.1 Solanum lycopersicum
Solyc12g006830.2 Solanum lycopersicum
Sopen06g035480 Solanum pennellii
Sopen09g027500 Solanum pennellii
Sopen12g002800 Solanum pennellii
Sp1g39310 Schrenkiella parvula
Sp3g13890 Schrenkiella parvula
Sp4g21200 Schrenkiella parvula
Sp5g07880 Schrenkiella parvula
SpUn0962_0010 Schrenkiella parvula
TAR365G0032 Trochodendron aralioides
TAR383G0602 Trochodendron aralioides
TAR625G0339 Trochodendron aralioides
TAR636G0492 Trochodendron aralioides
TAR636G1574 Trochodendron aralioides
THA.LOC104798868 Tarenaya hassleriana
THA.LOC104803165 Tarenaya hassleriana
THA.LOC104809198 Tarenaya hassleriana
THA.LOC104818042 Tarenaya hassleriana
THA.LOC104824182 Tarenaya hassleriana
THA.LOC104824397 Tarenaya hassleriana
Thecc.01G269200 Theobroma cacao
Thecc.06G076700 Theobroma cacao
Thecc.09G119500 Theobroma cacao
Thhalv10010813m.g Eutrema salsugineum
Thhalv10011855m.g Eutrema salsugineum
Thhalv10017405m.g Eutrema salsugineum
Thhalv10021747m.g Eutrema salsugineum
TPR.G1707 Trifolium pratense
TPR.G39152 Trifolium pratense
TWI12G0782 Tripterygium wilfordii
TWI12G0792 Tripterygium wilfordii
TWI18G1161 Tripterygium wilfordii
TWI18G1457 Tripterygium wilfordii
TWI75G1506 Tripterygium wilfordii
unitig_0.g143 Utricularia gibba
unitig_32.g10927 Utricularia gibba
unitig_749.g13738 Utricularia gibba
vmacro02621 Vaccinium macrocarpon
vmacro14882 Vaccinium macrocarpon
vmacro16930 Vaccinium macrocarpon
vmacro20643 Vaccinium macrocarpon
VMungo0720G1095 Vigna mungo
VMungo1309G2231 Vigna mungo
VMungo1383G2904 Vigna mungo
Zm00001eb004730 Zea mays
Zm00001eb004820 Zea mays
Zm00001eb047730 Zea mays
Zm00001eb056890 Zea mays
Zm00001eb114640 Zea mays
Zm00001eb114760 Zea mays
Zm00001eb215110 Zea mays
Zm00001eb341920 Zea mays
Zm00001eb345480 Zea mays
Zm00001eb409640 Zea mays

User provided reference genes

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