Gene: AT1G52740
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G52740
- Transcript Identifier AT1G52740.1
- Gene Type Coding gene
- Location Chr1 : 19645409-19646221 : positive
Gene Family Information
- ID HOM05D000221
- #Genes/#Species 1858/100
- Phylogenetic origin
- ID ORTHO05D001308
- #Genes/#Species 435/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G52740.1
- symbol HTA9
- uniprot Q9C944
Descriptions
- Description histone H2A protein 9
- Computational description histone H2A protein 9 (HTA9); FUNCTIONS IN: DNA binding; INVOLVED IN: detection of temperature stimulus, defense response to bacterium, regulation of flower development; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 11 (TAIR:AT3G54560.1); Has 3910 Blast hits to 3905 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 2573; Fungi - 292; Plants - 612; Viruses - 4; Other Eukaryotes - 429 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006342 | IBA | Gene Ontology | chromatin silencing | 1 |
| GO:0044030 | IGI | Gene Ontology | regulation of DNA methylation | 2 |
| GO:0010468 | IGI | Gene Ontology | regulation of gene expression | 2 |
| GO:0009266 | IGI | Gene Ontology | response to temperature stimulus | 3 |
| GO:0042742 | IGI | Gene Ontology | defense response to bacterium | 4 |
| GO:0009909 | IGI | Gene Ontology | regulation of flower development | 5 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046982 | IEA | Gene Ontology | protein heterodimerization activity | |
| GO:0046982 | IEA | InterPro | protein heterodimerization activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IBA | Gene Ontology | DNA binding | 1 |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 6 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000786 | IEA | GOA Database | nucleosome | |
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0005773 | IDA | GOA Database | vacuole | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | HDA ISM | Gene Ontology | nucleus | 7 |
| GO:0005694 | IEA | GOA Database | chromosome | |
| GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 8 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.1.1 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H2A) |