Gene: Solyc06g084090.4
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc06g084090.4
- Transcript Identifier Solyc06g084090.4.1
- Gene Type Coding gene
- Location SL4.0ch06 : 46910436-46913158 : positive
Gene Family Information
- ID HOM05D000221
- #Genes/#Species 1858/100
- Phylogenetic origin
- ID ORTHO05D001308
- #Genes/#Species 435/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc06g084090.4.1
- uniprot A0A3Q7H5Q0
- gene_id Solyc06g084090
Descriptions
- Description Histone H2A (AHRD V3.3 *** A0A2G3CCJ9_CAPCH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0044030 | ISO | PLAZA Integrative Orthology | regulation of DNA methylation | AT2G38810 |
| GO:0016048 | ISO | PLAZA Integrative Orthology | detection of temperature stimulus | AT3G54560 |
| GO:0042742 | ISO | PLAZA Integrative Orthology | defense response to bacterium | AT3G54560 |
| GO:0006970 | ISO | PLAZA Integrative Orthology | response to osmotic stress | AT3G54560 |
| GO:0010468 | ISO | PLAZA Integrative Orthology | regulation of gene expression | AT2G38810 |
| GO:0009908 | ISO | PLAZA Integrative Orthology | flower development | AT3G54560 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT3G54560 |
| GO:0009909 | ISO | PLAZA Integrative Orthology | regulation of flower development | AT2G38810 |
| GO:0006342 | IBA | GOA Database | chromatin silencing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G54560 |
| GO:0003677 | IBA IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046982 | IEA | GOA Database | protein heterodimerization activity | |
| GO:0046982 | IEA | InterPro | protein heterodimerization activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT2G38810 |
| GO:0000786 | IEA | GOA Database | nucleosome | |
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005694 | IEA | GOA Database | chromosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.1.1 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H2A) |