Gene: PGSC0003DMG401020138
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG401020138
- Transcript Identifier PGSC0003DMT400051891
- Gene Type Coding gene
- Location ST4.03ch06 : 58903704-58905601 : positive
Gene Family Information
- ID HOM05D000221
- #Genes/#Species 1858/100
- Phylogenetic origin
- ID ORTHO05D001308
- #Genes/#Species 435/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- pacid 37452113
- id PGSC0003DMG401020138.v4.03
- uniprot M1BSE4
Descriptions
- Description Histone H2A variant 1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0044030 | ISO | PLAZA Integrative Orthology | regulation of DNA methylation | AT2G38810 |
| GO:0016048 | ISO | PLAZA Integrative Orthology | detection of temperature stimulus | AT3G54560 |
| GO:0042742 | ISO | PLAZA Integrative Orthology | defense response to bacterium | AT3G54560 |
| GO:0006970 | ISO | PLAZA Integrative Orthology | response to osmotic stress | AT3G54560 |
| GO:0010468 | ISO | PLAZA Integrative Orthology | regulation of gene expression | AT2G38810 |
| GO:0009908 | ISO | PLAZA Integrative Orthology | flower development | AT3G54560 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT3G54560 |
| GO:0009909 | ISO | PLAZA Integrative Orthology | regulation of flower development | AT2G38810 |
| GO:0006342 | IBA | GOA Database | chromatin silencing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G54560 |
| GO:0046982 | IEA | GOA Database | protein heterodimerization activity | |
| GO:0046982 | IEA | InterPro | protein heterodimerization activity | |
| GO:0003677 | IBA IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT2G38810 |
| GO:0000786 | IEA | GOA Database | nucleosome | |
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005694 | IEA | GOA Database | chromosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.1.1 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H2A) |