Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p10960 Brassica napus
A04p21340 Brassica napus
A06p28500 Brassica napus
A07p11740 Brassica napus
A07p18640 Brassica napus
A08p26280 Brassica napus
A10p18090 Brassica napus
Aa31LG11G1650 Aethionema arabicum
Aa31LG1G12790 Aethionema arabicum
Aa31LG5G8030 Aethionema arabicum
Aa31LG7G10010 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1870 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.134 Anthoceros agrestis
Actinidia03698 Actinidia chinensis
Actinidia08912 Actinidia chinensis
Actinidia18290 Actinidia chinensis
Actinidia20432 Actinidia chinensis
Actinidia36845 Actinidia chinensis
Ah.01g003250 Amaranthus hybridus
Ah.11g046970 Amaranthus hybridus
AL1G40860 Arabidopsis lyrata
AL4G22040 Arabidopsis lyrata
AL5G32330 Arabidopsis lyrata
AL6G34080 Arabidopsis lyrata
AL8G38610 Arabidopsis lyrata
Aqoxy1G01127 Aquilegia oxysepala
Aqoxy2G01707 Aquilegia oxysepala
Aqoxy3G01869 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1GBZ2D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.58BRV0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HRUQ2D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J5Y3U9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JS9NQ6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M2DJJT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NPC14S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X06H87 Arachis hypogaea
AT1G27440 Arabidopsis thaliana
AT2G28110 Arabidopsis thaliana
AT5G22940 Arabidopsis thaliana
AT5G61840 Arabidopsis thaliana
ATR0582G373 Amborella trichopoda
ATR0723G007 Amborella trichopoda
ATR0723G070 Amborella trichopoda
Atru.chr12.1427 Acer truncatum
Atru.chr3.3532 Acer truncatum
Atru.chr6.1935 Acer truncatum
AUR62014953 Chenopodium quinoa
AUR62029184 Chenopodium quinoa
AUR62032210 Chenopodium quinoa
AUR62043376 Chenopodium quinoa
BcaB01g04685 Brassica carinata
BcaB02g09606 Brassica carinata
BcaB02g10141 Brassica carinata
BcaB03g13982 Brassica carinata
BcaB06g28188 Brassica carinata
BcaB08g36391 Brassica carinata
BcaC01g01612 Brassica carinata
BcaC01g02440 Brassica carinata
BcaC01g06561 Brassica carinata
BcaC01g06951 Brassica carinata
BcaC02g08207 Brassica carinata
BcaC02g10945 Brassica carinata
BcaC04g19613 Brassica carinata
BcaC06g35294 Brassica carinata
BolC3t13730H Brassica oleracea
BolC3t18780H Brassica oleracea
BolC3t19670H Brassica oleracea
BolC4t23843H Brassica oleracea
BolC4t27252H Brassica oleracea
BolC7t42279H Brassica oleracea
BolC9t58240H Brassica oleracea
BraA03t10406Z Brassica rapa
BraA04t17700Z Brassica rapa
BraA06t25793Z Brassica rapa
BraA07t28959Z Brassica rapa
BraA07t29577Z Brassica rapa
BraA08t34579Z Brassica rapa
BraA10t43884Z Brassica rapa
C03p12620 Brassica napus
C03p65270 Brassica napus
C03p73780 Brassica napus
C04p23400 Brassica napus
C04p57260 Brassica napus
C07p17730 Brassica napus
C09p53650 Brassica napus
CAN.G1089.17 Capsicum annuum
CAN.G1638.6 Capsicum annuum
CAN.G47.1 Capsicum annuum
CAN.G546.32 Capsicum annuum
CANSAT64G2859 Cannabis sativa
CANSAT80G1159 Cannabis sativa
CARHR027040 Cardamine hirsuta
CARHR120880 Cardamine hirsuta
CARHR190590 Cardamine hirsuta
CARHR275600 Cardamine hirsuta
Carub.0001s2599 Capsella rubella
Carub.0004s0889 Capsella rubella
Carub.0006s2072 Capsella rubella
Carub.0008s2254 Capsella rubella
Ca_01710_v3 Cicer arietinum L.
Ca_16824_v3 Cicer arietinum L.
Ca_16825_v3 Cicer arietinum L.
Ca_19313_v3 Cicer arietinum L.
CBR_g471 Chara braunii
Cc01_g10400 Coffea canephora
Cc04_g05790 Coffea canephora
CDE05G2619 Ceratophyllum demersum
CDE06G2557 Ceratophyllum demersum
CDE08G1482 Ceratophyllum demersum
Cfa009454 Carpinus fangiana
Cfa010297 Carpinus fangiana
Cfa018700 Carpinus fangiana
Ciclev10005075m.g Citrus clementina
Ciclev10028404m.g Citrus clementina
Ciclev10031659m.g Citrus clementina
CiPaw.05G100800 Carya illinoinensis
CiPaw.06G109800 Carya illinoinensis
CiPaw.12G000600 Carya illinoinensis
CiPaw.13G123900 Carya illinoinensis
ClCG02G021530 Citrullus lanatus
ClCG03G002450 Citrullus lanatus
ClCG06G018400 Citrullus lanatus
ClCG07G011960 Citrullus lanatus
COL.COLO4_11111 Corchorus olitorius
COL.COLO4_37267 Corchorus olitorius
Cpa.g.sc1.13 Carica papaya
Cpa.g.sc13.182 Carica papaya
Cpa.g.sc38.66 Carica papaya
Cre03.g205250 Chlamydomonas reinhardtii
Cre14.g619854 Chlamydomonas reinhardtii
CsaV3_1G000040 Cucumis sativus L.
CsaV3_1G013130 Cucumis sativus L.
CsaV3_4G002200 Cucumis sativus L.
CsaV3_6G014290 Cucumis sativus L.
CSS0013616 Camellia sinensis var. sinensis
CSS0015373 Camellia sinensis var. sinensis
CSS0017967 Camellia sinensis var. sinensis
CSS0024920 Camellia sinensis var. sinensis
CSS0031275 Camellia sinensis var. sinensis
CSS0040060 Camellia sinensis var. sinensis
CSS0049274 Camellia sinensis var. sinensis
DCAR_015512 Daucus carota
DCAR_016337 Daucus carota
DCAR_018773 Daucus carota
DCAR_021394 Daucus carota
Dinv13712 Davidia involucrata
Dinv16208 Davidia involucrata
Dinv23233 Davidia involucrata
Dinv29368 Davidia involucrata
Dinv34735 Davidia involucrata
Duzib052G1240 Durio zibethinus
Duzib068G1003 Durio zibethinus
Duzib084G0835 Durio zibethinus
Duzib132G0090 Durio zibethinus
Duzib168G0401 Durio zibethinus
Duzib170G0158 Durio zibethinus
Duzib205G0312 Durio zibethinus
ECA232G4473 Erigeron canadensis
ECA233G1541 Erigeron canadensis
ECA238G0041 Erigeron canadensis
ECA247G0327 Erigeron canadensis
ECA248G3939 Erigeron canadensis
EL10Ac4g07619 Beta vulgaris
EL10Ac9g22602 Beta vulgaris
Eucgr.G01977 Eucalyptus grandis
Eucgr.J00384 Eucalyptus grandis
Eucgr.K02191 Eucalyptus grandis
FAN04G1370 Fragaria x ananassa
FAN07G1466 Fragaria x ananassa
FAN08G1290 Fragaria x ananassa
FAN12G0157 Fragaria x ananassa
FAN16G2206 Fragaria x ananassa
FAN17G1191 Fragaria x ananassa
FAN18G2899 Fragaria x ananassa
FAN21G3026 Fragaria x ananassa
FAN25G3645 Fragaria x ananassa
FvH4_3g30840 Fragaria vesca
FvH4_4g22570 Fragaria vesca
FvH4_5g09690 Fragaria vesca
Glyma.04G202200 Glycine max
Glyma.05G199900 Glycine max
Glyma.06G163300 Glycine max
Glyma.11G193500 Glycine max
Glyma.12G080300 Glycine max
Glyma.12G178100 Glycine max
Glyma.13G322400 Glycine max
Gohir.A03G153100 Gossypium hirsutum
Gohir.A05G106900 Gossypium hirsutum
Gohir.A12G140100 Gossypium hirsutum
Gohir.A12G194000 Gossypium hirsutum
Gohir.A13G232800 Gossypium hirsutum
Gohir.D02G175900 Gossypium hirsutum
Gohir.D05G107000 Gossypium hirsutum
Gohir.D12G144600 Gossypium hirsutum
Gohir.D12G196400 Gossypium hirsutum
Gohir.D13G238500 Gossypium hirsutum
Gorai.005G197500 Gossypium raimondii
Gorai.008G156000 Gossypium raimondii
Gorai.008G211000 Gossypium raimondii
Gorai.009G111000 Gossypium raimondii
Gorai.013G269400 Gossypium raimondii
GSVIVG01001097001 Vitis vinifera
GSVIVG01008661001 Vitis vinifera
GSVIVG01031485001 Vitis vinifera
HanXRQChr01g0019561 Helianthus annuus
HanXRQChr02g0055461 Helianthus annuus
HanXRQChr09g0273791 Helianthus annuus
HanXRQChr13g0396241 Helianthus annuus
HanXRQChr14g0452531 Helianthus annuus
HanXRQChr16g0498961 Helianthus annuus
Haze_07090 Corylus avellana
Haze_12508 Corylus avellana
Haze_23722 Corylus avellana
Hma1.2p1_0051F.1_g029360 Hydrangea macrophylla
Hma1.2p1_0452F.1_g155950 Hydrangea macrophylla
Hma1.2p1_0577F.1_g182190 Hydrangea macrophylla
HPP92_008499 Vanilla planifolia
HPP92_023024 Vanilla planifolia
Hund01443 Selenicereus undatus
Hund02514 Selenicereus undatus
Lalb_Chr01g0004571 Lupinus albus
Lalb_Chr03g0027671 Lupinus albus
Lalb_Chr08g0237581 Lupinus albus
Lalb_Chr11g0069111 Lupinus albus
Lalb_Chr23g0272851 Lupinus albus
Lalb_Chr24g0394901 Lupinus albus
Lj1g0020535 Lotus japonicus
Lj2A1011T27 Lonicera japonica
Lj3g0009534 Lotus japonicus
Lj3g0020211 Lotus japonicus
Lj4g0003560 Lotus japonicus
Lj5A86T70 Lonicera japonica
Lj9A488T60 Lonicera japonica
Lsat_1_v5_gn_1_64481 Lactuca sativa
Lsat_1_v5_gn_2_99340 Lactuca sativa
Lsat_1_v5_gn_4_84321 Lactuca sativa
Lsat_1_v5_gn_6_44241 Lactuca sativa
Manes.04G013800 Manihot esculenta
Manes.06G127200 Manihot esculenta
Manes.08G100700 Manihot esculenta
Manes.09G188500 Manihot esculenta
Manes.11G151600 Manihot esculenta
Manes.14G043900 Manihot esculenta
Mapoly0002s0257 Marchantia polymorpha
Mapoly0050s0126 Marchantia polymorpha
MBI07_g35981_MAGBIO Magnolia biondii
MBI07_g48059_MAGBIO Magnolia biondii
MBI11_g34557_MAGBIO Magnolia biondii
MBI18_g24934_MAGBIO Magnolia biondii
MD03G1126500 Malus domestica
MD06G1129200 Malus domestica
MD11G1146800 Malus domestica
MD13G1131300 Malus domestica
MD14G1146200 Malus domestica
MD16G1141600 Malus domestica
Medtr2g084245 Medicago truncatula
Medtr4g057500 Medicago truncatula
Medtr8g096140 Medicago truncatula
Medtr8g096160 Medicago truncatula
MELO3C004998.2 Cucumis melo
MELO3C017818.2 Cucumis melo
MELO3C026156.2 Cucumis melo
MELO3C026947.2 Cucumis melo
Migut.D01175 Erythranthe guttata
Migut.D02286 Erythranthe guttata
Migut.I00666 Erythranthe guttata
Migut.K01051 Erythranthe guttata
Migut.N02563 Erythranthe guttata
MSTRG.18698 Avicennia marina
MSTRG.21092 Avicennia marina
MSTRG.22812 Avicennia marina
MSTRG.8057 Avicennia marina
MSTRG.9376 Avicennia marina
Nitab4.5_0000329g0150 Nicotiana tabacum
Nitab4.5_0000334g0080 Nicotiana tabacum
Nitab4.5_0000391g0010 Nicotiana tabacum
Nitab4.5_0000532g0030 Nicotiana tabacum
Nitab4.5_0001819g0030 Nicotiana tabacum
Nitab4.5_0002540g0010 Nicotiana tabacum
Nitab4.5_0004289g0010 Nicotiana tabacum
Nitab4.5_0007345g0010 Nicotiana tabacum
Nitab4.5_0010766g0020 Nicotiana tabacum
Nitab4.5_0010766g0030 Nicotiana tabacum
Nitab4.5_0012624g0010 Nicotiana tabacum
Nitab4.5_0012775g0040 Nicotiana tabacum
Nn2g13833 Nelumbo nucifera
Nn3g16263 Nelumbo nucifera
Nn4g22125 Nelumbo nucifera
Nn6g35253 Nelumbo nucifera
Oeu000597.1 Olea europaea
Oeu018475.1 Olea europaea
Oeu029886.1 Olea europaea
Oeu040985.3 Olea europaea
Oeu046599.1 Olea europaea
Oeu051187.1 Olea europaea
Os01g0926400 Oryza sativa ssp. japonica
Os01g0926600 Oryza sativa ssp. japonica
Os01g0926700 Oryza sativa ssp. japonica
Os02g0520750 Oryza sativa ssp. japonica
Os03g0107900 Oryza sativa ssp. japonica
Os04g0398600 Oryza sativa ssp. japonica
Os10g0180000 Oryza sativa ssp. japonica
Peaxi162Scf00086g01318 Petunia axillaris
Peaxi162Scf00135g01431 Petunia axillaris
Peaxi162Scf00207g00230 Petunia axillaris
Peaxi162Scf00412g00051 Petunia axillaris
PGR102G1578 Punica granatum
PGR119G1950 Punica granatum
PGR119G2536 Punica granatum
PGSC0003DMG400000411 Solanum tuberosum
PGSC0003DMG400014472 Solanum tuberosum
PGSC0003DMG400025579 Solanum tuberosum
Phvul.002G281100 Phaseolus vulgaris
Phvul.005G130800 Phaseolus vulgaris
Phvul.009G160700 Phaseolus vulgaris
Phvul.011G085300 Phaseolus vulgaris
Potri.001G068100 Populus trichocarpa
Potri.003G162000 Populus trichocarpa
Potri.009G006500 Populus trichocarpa
Potri.012G109200 Populus trichocarpa
Potri.012G109600 Populus trichocarpa
Potri.015G107200 Populus trichocarpa
Potri.015G116700 Populus trichocarpa
Pp3c25_4460 Physcomitrium patens
Pp3c26_8080 Physcomitrium patens
Pp3c2_6740 Physcomitrium patens
Pp3c3_17750 Physcomitrium patens
Pp3c4_17130 Physcomitrium patens
Prupe.1G214300 Prunus persica
Prupe.5G140500 Prunus persica
Prupe.6G110800 Prunus persica
Psat5g252280 Pisum sativum
Psat7g039680 Pisum sativum
Psat7g039720 Pisum sativum
Psat7g147600 Pisum sativum
PSO017G0482 Papaver somniferum
PSO063G1921 Papaver somniferum
PSO339G5790 Papaver somniferum
PSO339G6089 Papaver somniferum
PSO478G4588 Papaver somniferum
PSO801G0130 Papaver somniferum
QL01p014299 Quercus lobata
QL01p015326 Quercus lobata
QL03p049046 Quercus lobata
QL10p000308 Quercus lobata
RcHm_v2.0_Chr4g0428811 Rosa chinensis
RcHm_v2.0_Chr5g0057051 Rosa chinensis
RcHm_v2.0_Chr7g0188551 Rosa chinensis
Rhsim01G0211200 Rhododendron simsii
Rhsim11G0027800 Rhododendron simsii
Rhsim12G0181200 Rhododendron simsii
Sabra01G0047400 Salix brachista
Sabra03G0117700 Salix brachista
Sabra07G0095300 Salix brachista
Sabra09G0003700 Salix brachista
Sabra12G0079900 Salix brachista
Sabra15G0130400 Salix brachista
SalBow3G0812 Salvia bowleyana
SalBow3G2614 Salvia bowleyana
SalBow4G0358 Salvia bowleyana
SalBow6G2245 Salvia bowleyana
SalBow6G4729 Salvia bowleyana
SalBow7G1058 Salvia bowleyana
Sc04g0000150 Simmondsia chinensis
Sc04g0000160 Simmondsia chinensis
Sc11g0000090 Simmondsia chinensis
Sc15g0001590 Simmondsia chinensis
Sed0004068 Sechium edule
Sed0014931 Sechium edule
Sed0016410 Sechium edule
Sed0022743 Sechium edule
SEGI_16062 Sequoiadendron giganteum
SEGI_23771 Sequoiadendron giganteum
SGA_v2.0_scaffold27G11556 Striga asiatica
SGA_v2.0_scaffold379G50342 Striga asiatica
SGA_v2.0_scaffold40G15684 Striga asiatica
SGA_v2.0_scaffold74G24646 Striga asiatica
SHI06231 Sapria himalayana
SMO100G0001 Selaginella moellendorffii
SMO141G0263 Selaginella moellendorffii
SMO146G0109 Selaginella moellendorffii
Solyc05g012730.1 Solanum lycopersicum
Solyc06g068770.3 Solanum lycopersicum
Solyc11g066320.2 Solanum lycopersicum
Solyc12g042360.3 Solanum lycopersicum
Sopen05g007560 Solanum pennellii
Sopen06g026050 Solanum pennellii
Sopen11g026060 Solanum pennellii
Sopen12g021290 Solanum pennellii
Sp1g23680 Schrenkiella parvula
Sp2g25040 Schrenkiella parvula
Sp4g10920 Schrenkiella parvula
Sp6g22450 Schrenkiella parvula
TAR374G0321 Trochodendron aralioides
TAR622G0585 Trochodendron aralioides
TAR629G2141 Trochodendron aralioides
TAR633G0759 Trochodendron aralioides
THA.LOC104800581 Tarenaya hassleriana
THA.LOC104807240 Tarenaya hassleriana
THA.LOC104810878 Tarenaya hassleriana
THA.LOC104814816 Tarenaya hassleriana
THA.LOC104818286 Tarenaya hassleriana
Thecc.02G191500 Theobroma cacao
Thecc.03G141600 Theobroma cacao
Thecc.09G350000 Theobroma cacao
Thhalv10004300m.g Eutrema salsugineum
Thhalv10007763m.g Eutrema salsugineum
Thhalv10013464m.g Eutrema salsugineum
Thhalv10016649m.g Eutrema salsugineum
Thhalv10016978m.g Eutrema salsugineum
Thhalv10017970m.g Eutrema salsugineum
TPR.G12789 Trifolium pratense
TPR.G12872 Trifolium pratense
TPR.G21038 Trifolium pratense
TPR.G28596 Trifolium pratense
TWI18G0611 Tripterygium wilfordii
TWI23G0642 Tripterygium wilfordii
TWI31G0771 Tripterygium wilfordii
TWI39G1188 Tripterygium wilfordii
TWI75G1577 Tripterygium wilfordii
TWI79G0880 Tripterygium wilfordii
TWI79G1056 Tripterygium wilfordii
unitig_0.g1498 Utricularia gibba
unitig_21.g20341 Utricularia gibba
unitig_747.g21975 Utricularia gibba
vmacro14397 Vaccinium macrocarpon
vmacro16760 Vaccinium macrocarpon
VMungo0251G2964 Vigna mungo
VMungo0464G1762 Vigna mungo
VMungo1080G0869 Vigna mungo
VMungo1127G1315 Vigna mungo
VMungo1309G3048 Vigna mungo
Zm00001eb000640 Zea mays
Zm00001eb015780 Zea mays
Zm00001eb076450 Zea mays
Zm00001eb084750 Zea mays
Zm00001eb142640 Zea mays
Zm00001eb142710 Zea mays
Zm00001eb142720 Zea mays
Zm00001eb191760 Zea mays
Zm00001eb214150 Zea mays
Zm00001eb294800 Zea mays
Zm00001eb294810 Zea mays
Zm00001eb342840 Zea mays
Zm00001eb363850 Zea mays
Zm00001eb363870 Zea mays
Zm00001eb404290 Zea mays
Zm00001eb404300 Zea mays

User provided reference genes

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