Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p01600 Brassica napus
Aa31LG1G21070 Aethionema arabicum
Actinidia03846 Actinidia chinensis
Ah.08g211530 Amaranthus hybridus
AL2G15940 Arabidopsis lyrata
AL6G13910 Arabidopsis lyrata
Aqoxy2G01695 Aquilegia oxysepala
Aqoxy2G02465 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3AH3YU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SNA779 Arachis hypogaea
AT1G60650 Arabidopsis thaliana
AT5G04280 Arabidopsis thaliana
ATR0665G372 Amborella trichopoda
ATR0665G443 Amborella trichopoda
Atru.chr12.874 Acer truncatum
Atru.chr12.875 Acer truncatum
Atru.chr8.1764 Acer truncatum
Atru.chr8.1765 Acer truncatum
AUR62001695 Chenopodium quinoa
AUR62026923 Chenopodium quinoa
AUR62042058 Chenopodium quinoa
BcaB01g05775 Brassica carinata
BcaB05g22425 Brassica carinata
BcaC03g12941 Brassica carinata
BolC3t12747H Brassica oleracea
BraA03t09534Z Brassica rapa
BraA09t37367Z Brassica rapa
C01p37200 Brassica napus
C03p01930 Brassica napus
CANSAT64G1994 Cannabis sativa
CANSAT80G2867 Cannabis sativa
CARHR052280 Cardamine hirsuta
CARHR209000 Cardamine hirsuta
Carub.0002s0468 Capsella rubella
Carub.0006s0323 Capsella rubella
Ca_11194_v3 Cicer arietinum L.
Cc02_g10770 Coffea canephora
Cc02_g10780 Coffea canephora
CDE02G3069 Ceratophyllum demersum
CDE02G4598 Ceratophyllum demersum
CDE05G3643 Ceratophyllum demersum
Cfa001800 Carpinus fangiana
Cfa001801 Carpinus fangiana
Cfa017638 Carpinus fangiana
Ciclev10032520m.g Citrus clementina
CiPaw.01G267500 Carya illinoinensis
CiPaw.02G171600 Carya illinoinensis
ClCG05G021270 Citrullus lanatus
ClCG08G007820 Citrullus lanatus
COL.COLO4_36551 Corchorus olitorius
Cpa.g.sc53.146 Carica papaya
Cpa.g.sc53.147 Carica papaya
CsaV3_2G020900 Cucumis sativus L.
CsaV3_2G021100 Cucumis sativus L.
CSS0005536 Camellia sinensis var. sinensis
CSS0027147 Camellia sinensis var. sinensis
CSS0034790 Camellia sinensis var. sinensis
CSS0048765 Camellia sinensis var. sinensis
DCAR_006405 Daucus carota
Dinv41792 Davidia involucrata
Duzib068G0140 Durio zibethinus
Duzib114G0897 Durio zibethinus
Duzib128G0911 Durio zibethinus
ECA238G2158 Erigeron canadensis
EL10Ac3g06313 Beta vulgaris
EL10Ac7g16661 Beta vulgaris
Eucgr.J01044 Eucalyptus grandis
FAN01G2622 Fragaria x ananassa
FAN03G0654 Fragaria x ananassa
FAN06G3745 Fragaria x ananassa
FAN06G5022 Fragaria x ananassa
FAN10G1475 Fragaria x ananassa
FAN10G2862 Fragaria x ananassa
FvH4_7g18520 Fragaria vesca
Glyma.10G276500 Glycine max
Glyma.20G113200 Glycine max
Gohir.A10G201200 Gossypium hirsutum
Gohir.D10G209000 Gossypium hirsutum
Gorai.011G235100 Gossypium raimondii
GSVIVG01011339001 Vitis vinifera
GSVIVG01016195001 Vitis vinifera
GSVIVG01033666001 Vitis vinifera
HanXRQChr03g0065761 Helianthus annuus
HanXRQChr14g0456531 Helianthus annuus
Haze_16750 Corylus avellana
Haze_16751 Corylus avellana
Haze_20513 Corylus avellana
HPP92_005748 Vanilla planifolia
HPP92_017522 Vanilla planifolia
Lalb_Chr03g0036261 Lupinus albus
Lalb_Chr19g0129381 Lupinus albus
Lalb_Chr19g0129391 Lupinus albus
Lj2A22G66 Lonicera japonica
Lj3A937G87 Lonicera japonica
Lj5g0022774 Lotus japonicus
Lsat_1_v5_gn_2_113200 Lactuca sativa
Manes.10G051200 Manihot esculenta
MBI04_g13679_MAGBIO Magnolia biondii
MD01G1101500 Malus domestica
MD07G1168200 Malus domestica
MELO3C012401.2 Cucumis melo
MELO3C019833.2 Cucumis melo
Migut.F01713 Erythranthe guttata
MSTRG.8127 Avicennia marina
MSTRG.9145 Avicennia marina
Nitab4.5_0001278g0040 Nicotiana tabacum
Nitab4.5_0001359g0090 Nicotiana tabacum
Nitab4.5_0001450g0020 Nicotiana tabacum
Nitab4.5_0002285g0020 Nicotiana tabacum
Nitab4.5_0002893g0010 Nicotiana tabacum
Nn6g35249 Nelumbo nucifera
Oeu000659.1 Olea europaea
Oeu007407.1 Olea europaea
Oeu013852.1 Olea europaea
Oeu013853.1 Olea europaea
Oeu033869.1 Olea europaea
Oeu055365.1 Olea europaea
Os03g0681900 Oryza sativa ssp. japonica
Peaxi162Scf00145g00811 Petunia axillaris
Peaxi162Scf00253g00327 Petunia axillaris
PGR044G1831 Punica granatum
PGSC0003DMG400016922 Solanum tuberosum
PGSC0003DMG400031080 Solanum tuberosum
Phvul.007G025050 Phaseolus vulgaris
Potri.008G033000 Populus trichocarpa
Potri.010G228700 Populus trichocarpa
Prupe.2G206800 Prunus persica
Psat6g229760 Pisum sativum
PSO339G1141 Papaver somniferum
PSO384G4292 Papaver somniferum
PSO696G0001 Papaver somniferum
PSO801G0725 Papaver somniferum
QL07p042820 Quercus lobata
QL08p053633 Quercus lobata
RcHm_v2.0_Chr1g0362301 Rosa chinensis
Rhsim03G0088000 Rhododendron simsii
Rhsim03G0089800 Rhododendron simsii
Rhsim03G0115000 Rhododendron simsii
Rhsim11G0133600 Rhododendron simsii
Sabra08G0021900 Salix brachista
Sabra10G0177400 Salix brachista
SalBow6G2109 Salvia bowleyana
Sc10g0008920 Simmondsia chinensis
Sc20g0003410 Simmondsia chinensis
Sed0002426 Sechium edule
Sed0011758 Sechium edule
Sed0020000 Sechium edule
Sed0027411 Sechium edule
SEGI_04637 Sequoiadendron giganteum
SEGI_12114 Sequoiadendron giganteum
SGA_v2.0_scaffold51G18710 Striga asiatica
Solyc03g071560.4 Solanum lycopersicum
Solyc11g008210.3 Solanum lycopersicum
Sopen03g019840 Solanum pennellii
Sopen11g003980 Solanum pennellii
Sp2g04070 Schrenkiella parvula
Sp6g38470 Schrenkiella parvula
TAR623G0946 Trochodendron aralioides
TAR633G1384 Trochodendron aralioides
THA.LOC104809978 Tarenaya hassleriana
THA.LOC104816430 Tarenaya hassleriana
THA.LOC104823202 Tarenaya hassleriana
Thecc.10G086400 Theobroma cacao
Thhalv10015645m.g Eutrema salsugineum
Thhalv10023624m.g Eutrema salsugineum
TPR.G26271 Trifolium pratense
TWI15G0746 Tripterygium wilfordii
TWI38G1352 Tripterygium wilfordii
TWI63G1197 Tripterygium wilfordii
vmacro07118 Vaccinium macrocarpon
vmacro07306 Vaccinium macrocarpon
VMungo0720G1413 Vigna mungo
Zm00001eb053020 Zea mays
Zm00001eb116730 Zea mays
Zm00001eb217310 Zea mays
Zm00001eb302210 Zea mays

User provided reference genes

Program Settings