Gene: AT5G04280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G04280
  • Transcript Identifier AT5G04280.1
  • Gene Type Coding gene
  • Location Chr5 : 1192461-1195413 : positive

Gene Family Information

  • ID HOM05D003978
  • #Genes/#Species 176/86
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G04280.1
  • symbol AtRZ-1c
  • Alias RZ-1c,RZ-1c
  • uniprot C0Z388

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
  • Computational description RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT1G60650.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048026
IGI
Gene Ontologypositive regulation of mRNA splicing, via spliceosome1
GO:0045892
IGI
Gene Ontologynegative regulation of transcription, DNA-templated1
GO:0009651
IEP
Gene Ontologyresponse to salt stress2
GO:0009414
IEP
Gene Ontologyresponse to water deprivation2
GO:0009409
IGI, IEP
Gene Ontologyresponse to cold2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
Gene OntologyRNA binding1
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IDA
Gene Ontologynucleic acid binding2
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
IDA, HDA
Gene OntologymRNA binding3 4
GO:0031490
IDA
Gene Ontologychromatin DNA binding1
GO:0003682
IDA
Gene Ontologychromatin binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
HDA
Gene Ontologyplasma membrane5
GO:0005634
IDA
ISM
Gene Ontologynucleus2
GO:0005730
HDA
Gene Ontologynucleolus6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001878 Zinc finger, CCHC-type
IPR036875 Zinc finger, CCHC-type superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.7.2 RNA processing.RNA chaperone activities.RNA chaperone (RZ1)