Gene: Sopen11g003980

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g003980
  • Transcript Identifier Sopen11g003980.2
  • Gene Type Coding gene
  • Location Spenn-ch11 : 2485771-2490935 : negative

Gene Family Information

  • ID HOM05D003978
  • #Genes/#Species 176/86
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g003980.2

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: nucleolus | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Zinc finger, CCHC-type | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G04280
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT5G04280
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT5G04280
GO:0048026
ISO
PLAZA Integrative Orthologypositive regulation of mRNA splicing, via spliceosome AT5G04280
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT5G04280

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0031490
ISO
PLAZA Integrative Orthologychromatin DNA binding AT5G04280
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G04280
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G04280
GO:0003682
ISO
PLAZA Integrative Orthologychromatin binding AT5G04280

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G04280
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT1G60650

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR001878 Zinc finger, CCHC-type
IPR036875 Zinc finger, CCHC-type superfamily
Mapman id Description
16.7.2 RNA processing.RNA chaperone activities.RNA chaperone (RZ1)