Gene: vmacro07118
General Information
Structural Information
- Species Vaccinium macrocarpon
- Gene Identifier vmacro07118
- Transcript Identifier vmacro07118-RA
- Gene Type Coding gene
- Location chr2_Vaccinium_macrocarpon_Stevens_v1 : 22607836-22609076 : positive
Gene Family Information
- ID HOM05D003978
- #Genes/#Species 176/86
- Phylogenetic origin
- ID ORTHO05D006033
- #Genes/#Species 148/85
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id vmacro07118_Vaccinium_macrocarpon_Stevens_v1
Descriptions
- Description Similar to RZ1C: Glycine-rich RNA-binding protein RZ1C (Arabidopsis thaliana OX=3702)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT5G04280 |
| GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT5G04280 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT5G04280 |
| GO:0048026 | ISO | PLAZA Integrative Orthology | positive regulation of mRNA splicing, via spliceosome | AT5G04280 |
| GO:0009414 | ISO | PLAZA Integrative Orthology | response to water deprivation | AT5G04280 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0031490 | ISO | PLAZA Integrative Orthology | chromatin DNA binding | AT5G04280 |
| GO:0008270 | ISO | PLAZA Homology (enrichment) | zinc ion binding | HOM05D003978 |
| GO:0003723 | ISO | PLAZA Integrative Orthology | RNA binding | AT5G04280 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G04280 |
| GO:0003682 | ISO | PLAZA Integrative Orthology | chromatin binding | AT5G04280 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G04280 |
| GO:0016607 | ISO | PLAZA Integrative Orthology | nuclear speck | AT1G60650 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR035979 | RNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 35.2 | not assigned.not annotate |