Gene: AT1G60650

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G60650
  • Transcript Identifier AT1G60650.3
  • Gene Type Coding gene
  • Location Chr1 : 22341174-22342148 : positive

Gene Family Information

  • ID HOM05D003978
  • #Genes/#Species 176/86
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G60650.3
  • symbol AtRZ-1b
  • Alias RZ-1b,RZ-1b
  • uniprot O22703

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
  • Computational description RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT5G04280.1); Has 964 Blast hits to 960 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 6; Plants - 589; Viruses - 3; Other Eukaryotes - 42 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045892
IGI
Gene Ontologynegative regulation of transcription, DNA-templated1
GO:0048026
IGI
Gene Ontologypositive regulation of mRNA splicing, via spliceosome1
GO:0009651
IEP
Gene Ontologyresponse to salt stress2
GO:0009414
IEP
Gene Ontologyresponse to water deprivation2
GO:0009409
IGI, IEP
Gene Ontologyresponse to cold2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IDA
Gene Ontologynucleic acid binding2
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003729
IDA
Gene OntologymRNA binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2
GO:0016607
IDA
Gene Ontologynuclear speck1
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR036875 Zinc finger, CCHC-type superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR001878 Zinc finger, CCHC-type
Mapman id Description
35.1 not assigned.annotated