Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p21980 Brassica napus
Aa31LG5G20240 Aethionema arabicum
Actinidia03018 Actinidia chinensis
Ah.16g101370 Amaranthus hybridus
AL4G36570 Arabidopsis lyrata
AL4G36890 Arabidopsis lyrata
AL879U10010 Arabidopsis lyrata
Aqoxy298s002 Aquilegia oxysepala
Aqoxy298s003 Aquilegia oxysepala
Aqoxy298s004 Aquilegia oxysepala
Aqoxy298s005 Aquilegia oxysepala
Aqoxy6G01538 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea
AT2G39260 Arabidopsis thaliana
ATR0810G286 Amborella trichopoda
Atru.chr12.623 Acer truncatum
Atru.chr12.624 Acer truncatum
Atru.chr2.540 Acer truncatum
AUR62023203 Chenopodium quinoa
AUR62023249 Chenopodium quinoa
AUR62023872 Chenopodium quinoa
BcaB01g03607 Brassica carinata
BcaB01g03658 Brassica carinata
BcaB06g29071 Brassica carinata
BcaC02g07417 Brassica carinata
BcaC02g07418 Brassica carinata
BcaC02g07419 Brassica carinata
BcaC02g10454 Brassica carinata
BolC3t14991H Brassica oleracea
BolC4t24411H Brassica oleracea
BolC4t28212H Brassica oleracea
BolC7t41958H Brassica oleracea
BraA03t11433Z Brassica rapa
BraA07t28706Z Brassica rapa
C03p26070 Brassica napus
C04p28760 Brassica napus
C04p67110 Brassica napus
C07p14600 Brassica napus
CAN.G742.17 Capsicum annuum
CARHR134000 Cardamine hirsuta
Carub.0004s2131 Capsella rubella
Ca_02521_v3 Cicer arietinum L.
CBR_g19436 Chara braunii
Cc09_g02440 Coffea canephora
CDE01G0014 Ceratophyllum demersum
Cfa001582 Carpinus fangiana
Cfa005722 Carpinus fangiana
Cfa006566 Carpinus fangiana
Ciclev10018539m.g Citrus clementina
CiPaw.01G277600 Carya illinoinensis
ClCG09G020390 Citrullus lanatus
COL.COLO4_23765 Corchorus olitorius
Cpa.g.sc1.272 Carica papaya
Cpa.g.sc1.275 Carica papaya
Cre17.g729250 Chlamydomonas reinhardtii
Cre17.g729393 Chlamydomonas reinhardtii
CsaV3_5G026020 Cucumis sativus L.
CSS0019567 Camellia sinensis var. sinensis
DCAR_027685 Daucus carota
Dinv17348 Davidia involucrata
Duzib106G1600 Durio zibethinus
Duzib114G0370 Durio zibethinus
Duzib128G0369 Durio zibethinus
ECA238G4557 Erigeron canadensis
EL10Ac2g04495 Beta vulgaris
Eucgr.G02792 Eucalyptus grandis
FAN07G1557 Fragaria x ananassa
FAN12G0118 Fragaria x ananassa
FAN12G0529 Fragaria x ananassa
FAN17G0927 Fragaria x ananassa
FAN22G0546 Fragaria x ananassa
FvH4_4g12630 Fragaria vesca
Glyma.09G087900 Glycine max
Glyma.15G194000 Glycine max
Gohir.A06G179002 Gossypium hirsutum
Gohir.D06G174100 Gossypium hirsutum
Gorai.010G203700 Gossypium raimondii
GSVIVG01016353001 Vitis vinifera
HanXRQChr03g0077291 Helianthus annuus
HanXRQChr07g0200911 Helianthus annuus
HanXRQChr09g0240751 Helianthus annuus
HanXRQChr09g0265821 Helianthus annuus
HanXRQChr14g0460881 Helianthus annuus
Haze_16947 Corylus avellana
Hma1.2p1_0786F.1_g217640 Hydrangea macrophylla
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla
HPP92_017237 Vanilla planifolia
HPP92_017238 Vanilla planifolia
Hund16198 Selenicereus undatus
Lalb_Chr08g0233271 Lupinus albus
Lalb_Chr11g0073411 Lupinus albus
Lj6g0026487 Lotus japonicus
Lj8C94T13 Lonicera japonica
Lsat_1_v5_gn_0_39640 Lactuca sativa
Lsat_1_v5_gn_2_116140 Lactuca sativa
Lsat_1_v5_gn_4_181660 Lactuca sativa
Lsat_1_v5_gn_6_42681 Lactuca sativa
Manes.07G101600 Manihot esculenta
Mapoly0202s0011 Marchantia polymorpha
MBI04_g36907_MAGBIO Magnolia biondii
MBI19_g06147_MAGBIO Magnolia biondii
MCO07G242 Micromonas commoda
MD01G1113500 Malus domestica
MD07G1181100 Malus domestica
Medtr2g048630 Medicago truncatula
MELO3C025497.2 Cucumis melo
Migut.D01216 Erythranthe guttata
MSTRG.9355 Avicennia marina
Nitab4.5_0000061g0390 Nicotiana tabacum
Nitab4.5_0000061g0410 Nicotiana tabacum
Nitab4.5_0000561g0080 Nicotiana tabacum
Nn2g10624 Nelumbo nucifera
Oeu033837.1 Olea europaea
Oeu055052.1 Olea europaea
Oeu055056.1 Olea europaea
Os02g0631500 Oryza sativa ssp. japonica
Os02g0631601 Oryza sativa ssp. japonica
Os04g0523200 Oryza sativa ssp. japonica
Os04g0523350 Oryza sativa ssp. japonica
Peaxi162Scf01024g00323 Petunia axillaris
Peaxi162Scf01024g00324 Petunia axillaris
PGR142G3475 Punica granatum
Phvul.009G216500 Phaseolus vulgaris
Potri.008G045400 Populus trichocarpa
Potri.010G216100 Populus trichocarpa
Pp3c11_19990 Physcomitrium patens
Pp3c7_4830 Physcomitrium patens
PRCOL_00005861 Prasinoderma coloniale
Prupe.2G220200 Prunus persica
Prupe.3G086600 Prunus persica
Psat0s6336g0040 Pisum sativum
Psat1g019320 Pisum sativum
Psat4g181480 Pisum sativum
Psat4g181560 Pisum sativum
Psat7g256680 Pisum sativum
PSO339G1038 Papaver somniferum
PSO384G1475 Papaver somniferum
QL08p057163 Quercus lobata
RcHm_v2.0_Chr3g0482831 Rosa chinensis
Rhsim03G0121600 Rhododendron simsii
Rhsim03G0121700 Rhododendron simsii
Rhsim09G0154800 Rhododendron simsii
Sabra08G0031600 Salix brachista
Sabra10G0167200 Salix brachista
SalBow1G8295 Salvia bowleyana
Sc10g0000900 Simmondsia chinensis
Sed0000671 Sechium edule
SEGI_04277 Sequoiadendron giganteum
SEGI_05715 Sequoiadendron giganteum
SEGI_09139 Sequoiadendron giganteum
SEGI_15949 Sequoiadendron giganteum
SEGI_19841 Sequoiadendron giganteum
SEGI_20568 Sequoiadendron giganteum
SEGI_38774 Sequoiadendron giganteum
SHI16912 Sapria himalayana
SHI16914 Sapria himalayana
SHI16918 Sapria himalayana
SHI16920 Sapria himalayana
SMO116G0081 Selaginella moellendorffii
Solyc04g049770.4 Solanum lycopersicum
Sopen04g020010 Solanum pennellii
Sp4g21570 Schrenkiella parvula
SpUn0018_0100 Schrenkiella parvula
TAR623G0957 Trochodendron aralioides
THA.LOC104809987 Tarenaya hassleriana
Thecc.10G066000 Theobroma cacao
Thhalv10016159m.g Eutrema salsugineum
TPR.G31980 Trifolium pratense
TPR.G40375 Trifolium pratense
TWI15G1255 Tripterygium wilfordii
unitig_899.g14816 Utricularia gibba
vmacro17942 Vaccinium macrocarpon
VMungo1309G0373 Vigna mungo
VMungo1309G1679 Vigna mungo
Zm00001eb185340 Zea mays
Zm00001eb247890 Zea mays

User provided reference genes

Program Settings