Gene: CSS0019567
General Information
Structural Information
- Species Camellia sinensis var. sinensis
- Gene Identifier CSS0019567
- Transcript Identifier CSS0019567.1
- Gene Type Coding gene
- Location Chr1 : 23996581-24014119 : negative
Gene Family Information
- ID HOM05D003924
- #Genes/#Species 178/96
- Phylogenetic origin
- ID ORTHO05D005216
- #Genes/#Species 162/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid CSS0019567.1
Descriptions
- Description PREDICTED: regulator of nonsense transcripts UPF2 isoform X2 [Vitis vinifera]
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0000184 | IEA | InterPro | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | |
GO:0048571 | ISO | PLAZA Integrative Orthology | long-day photoperiodism | AT2G39260 |
GO:0009611 | ISO | PLAZA Integrative Orthology | response to wounding | AT2G39260 |
GO:0009863 | ISO | PLAZA Integrative Orthology | salicylic acid mediated signaling pathway | AT2G39260 |
GO:0009867 | ISO | PLAZA Integrative Orthology | jasmonic acid mediated signaling pathway | AT2G39260 |
GO:0042742 | ISO | PLAZA Integrative Orthology | defense response to bacterium | AT2G39260 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003723 | IEA | InterPro | RNA binding | |
GO:0005515 | IEA | InterPro | protein binding | |
GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT2G39260 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT2G39260 |
GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT2G39260 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
17.3.2.4 | Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.co-effector protein (UPF2) |