Gene: Lj6g0026487

General Information

Structural Information

  • Species Lotus japonicus
  • Gene Identifier Lj6g0026487
  • Transcript Identifier Lj6g0026487.1
  • Gene Type Coding gene
  • Location chr6 : 46184304-46195266 : negative

Gene Family Information

  • ID HOM05D003924
  • #Genes/#Species 178/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lj6g0026487.Lj1.0v1
  • pacid 44932227

Descriptions

  • Description K14327 - regulator of nonsense transcripts 2 (UPF2, RENT2)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000184
IEA
InterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0048571
ISO
PLAZA Integrative Orthologylong-day photoperiodism AT2G39260
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT2G39260
GO:0009863
ISO
PLAZA Integrative Orthologysalicylic acid mediated signaling pathway AT2G39260
GO:0009867
ISO
PLAZA Integrative Orthologyjasmonic acid mediated signaling pathway AT2G39260
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT2G39260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0005515
IEA
InterProprotein binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G39260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G39260
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G39260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003890 MIF4G-like, type 3
IPR016021 MIF4G-like domain superfamily
IPR016024 Armadillo-type fold
IPR007193 Up-frameshift suppressor 2, C-terminal
IPR039762 Nonsense-mediated mRNA decay protein Nmd2/UPF2
Mapman id Description
15.3.4.4.1.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED19
17.3.2.4 Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.co-effector protein (UPF2)