Gene: Cc09_g02440

General Information

Structural Information

  • Species Coffea canephora
  • Gene Identifier Cc09_g02440
  • Transcript Identifier Cc09_g02440.1
  • Gene Type Coding gene
  • Location chr9 : 2079441-2091256 : positive

Gene Family Information

  • ID HOM05D003924
  • #Genes/#Species 178/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • UniProtKB P38798
  • UniProtKB Q9HAU5
  • UniProtKB I1MHT6
  • UniProtKB F6HNK8
  • UniProtKB O13824
  • UniProtKB B9HU08
  • id GSCOCG00017677001

Descriptions

  • Description Putative Nonsense-mediated mRNA decay protein 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000184
IEA
InterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0048571
ISO
PLAZA Integrative Orthologylong-day photoperiodism AT2G39260
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT2G39260
GO:0009863
ISO
PLAZA Integrative Orthologysalicylic acid mediated signaling pathway AT2G39260
GO:0009867
ISO
PLAZA Integrative Orthologyjasmonic acid mediated signaling pathway AT2G39260
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT2G39260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0005515
IEA
InterProprotein binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G39260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G39260
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G39260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003890 MIF4G-like, type 3
IPR016021 MIF4G-like domain superfamily
IPR016024 Armadillo-type fold
IPR007193 Up-frameshift suppressor 2, C-terminal
IPR039762 Nonsense-mediated mRNA decay protein Nmd2/UPF2
Mapman id Description
17.3.2.4 Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.co-effector protein (UPF2)