Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p17840 Brassica napus
A02p09450 Brassica napus
A02p19390 Brassica napus
A09p23650 Brassica napus
A10p13110 Brassica napus
Aa31LG3G11830 Aethionema arabicum
Aa31LG5G11970 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3404 Anthoceros agrestis
Actinidia35412 Actinidia chinensis
Actinidia37139 Actinidia chinensis
Actinidia37140 Actinidia chinensis
Ah.01g014980 Amaranthus hybridus
Ah.05g177330 Amaranthus hybridus
AL7G26290 Arabidopsis lyrata
AL7G36300 Arabidopsis lyrata
AL8G31480 Arabidopsis lyrata
Aqoxy1G01862 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AKBL7A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K9VFVK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PKXG4Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z9Q03Z Arachis hypogaea
AT4G17590 Arabidopsis thaliana
AT4G26600 Arabidopsis thaliana
AT5G55920 Arabidopsis thaliana
ATR0751G119 Amborella trichopoda
Atru.chr2.3736 Acer truncatum
Atru.chr2.3741 Acer truncatum
AUR62017142 Chenopodium quinoa
AUR62035665 Chenopodium quinoa
BcaB05g22238 Brassica carinata
BcaB08g35371 Brassica carinata
BcaB08g35958 Brassica carinata
BcaC03g15509 Brassica carinata
BcaC04g20188 Brassica carinata
BcaC07g37821 Brassica carinata
BcaC07g39178 Brassica carinata
BcaC09g50636 Brassica carinata
BcaNung02400 Brassica carinata
BolC1t02194H Brassica oleracea
BolC2t07673H Brassica oleracea
BolC2t07681H Brassica oleracea
BolC2t10305H Brassica oleracea
BolC8t48208H Brassica oleracea
BolC9t57537H Brassica oleracea
BraA01t01740Z Brassica rapa
BraA02t06009Z Brassica rapa
BraA10t43407Z Brassica rapa
C01p22640 Brassica napus
C02p15590 Brassica napus
C02p15740 Brassica napus
C03p75670 Brassica napus
C03p85060 Brassica napus
C08p21680 Brassica napus
C09p46870 Brassica napus
CAN.G424.40 Capsicum annuum
CAN.G585.28 Capsicum annuum
CAN.G618.4 Capsicum annuum
CANSAT11G2129 Cannabis sativa
CARHR234180 Cardamine hirsuta
CARHR269290 Cardamine hirsuta
Carub.0007s1427 Capsella rubella
Carub.0008s1625 Capsella rubella
Ca_12445_v3 Cicer arietinum L.
CBR_g46746 Chara braunii
CBR_g8798 Chara braunii
Cc04_g00350 Coffea canephora
CDE07G1104 Ceratophyllum demersum
Cfa016917 Carpinus fangiana
Cfa025549 Carpinus fangiana
Ciclev10007740m.g Citrus clementina
CiPaw.11G205600 Carya illinoinensis
CiPaw.12G139600 Carya illinoinensis
CiPaw.12G139700 Carya illinoinensis
ClCG09G021450 Citrullus lanatus
COL.COLO4_07725 Corchorus olitorius
Cpa.g.sc12.127 Carica papaya
Cre06.g273413 Chlamydomonas reinhardtii
CsaV3_7G011550 Cucumis sativus L.
CSS0004269 Camellia sinensis var. sinensis
CSS0010821 Camellia sinensis var. sinensis
CSS0024632 Camellia sinensis var. sinensis
DCAR_017070 Daucus carota
DCAR_017071 Daucus carota
Dinv10352 Davidia involucrata
Dinv40878 Davidia involucrata
Duzib213G0349 Durio zibethinus
ECA248G0890 Erigeron canadensis
EL10Ac4g07529 Beta vulgaris
Eucgr.C03787 Eucalyptus grandis
Eucgr.F02036 Eucalyptus grandis
Eucgr.L03517 Eucalyptus grandis
FAN04G1394 Fragaria x ananassa
FAN07G2833 Fragaria x ananassa
FAN12G1033 Fragaria x ananassa
FAN12G3679 Fragaria x ananassa
FAN17G0359 Fragaria x ananassa
FAN17G1343 Fragaria x ananassa
FAN22G0308 Fragaria x ananassa
FvH4_4g11570 Fragaria vesca
Glyma.08G332000 Glycine max
Glyma.18G075000 Glycine max
Gohir.A01G093200 Gossypium hirsutum
Gohir.A13G131500 Gossypium hirsutum
Gohir.D01G077700 Gossypium hirsutum
Gohir.D13G135000 Gossypium hirsutum
Gorai.002G102200 Gossypium raimondii
Gorai.013G151300 Gossypium raimondii
GSVIVG01014717001 Vitis vinifera
GSVIVG01014718001 Vitis vinifera
HanXRQChr11g0342791 Helianthus annuus
Haze_09846 Corylus avellana
Hma1.2p1_1804F.1_g303050 Hydrangea macrophylla
Hma1.2p1_1804F.1_g303060 Hydrangea macrophylla
HPP92_010888 Vanilla planifolia
HPP92_010890 Vanilla planifolia
Hund01870 Selenicereus undatus
Hund01871 Selenicereus undatus
Lalb_Chr15g0082251 Lupinus albus
Lalb_Chr20g0114091 Lupinus albus
Lj1A892G89 Lonicera japonica
Lj1A892G90 Lonicera japonica
Lj6g0020357 Lotus japonicus
Lsat_1_v5_gn_0_17681 Lactuca sativa
Lsat_1_v5_gn_0_44241 Lactuca sativa
Lsat_1_v5_gn_1_21940 Lactuca sativa
Lsat_1_v5_gn_1_7960 Lactuca sativa
Lsat_1_v5_gn_2_49000 Lactuca sativa
Lsat_1_v5_gn_4_111360 Lactuca sativa
Lsat_1_v5_gn_4_124240 Lactuca sativa
Lsat_1_v5_gn_8_95780 Lactuca sativa
Lsat_1_v5_gn_9_77040 Lactuca sativa
Manes.11G044000 Manihot esculenta
Mapoly0034s0108 Marchantia polymorpha
MBI14_g18948_MAGBIO Magnolia biondii
MCO14G316 Micromonas commoda
MD00G1066100 Malus domestica
MD04G1044800 Malus domestica
Medtr3g460700 Medicago truncatula
MELO3C024955.2 Cucumis melo
Migut.H01746 Erythranthe guttata
Nitab4.5_0000160g0180 Nicotiana tabacum
Nitab4.5_0002789g0050 Nicotiana tabacum
Nitab4.5_0003852g0020 Nicotiana tabacum
Nitab4.5_0003852g0030 Nicotiana tabacum
Nitab4.5_0003852g0040 Nicotiana tabacum
Nn4g24629 Nelumbo nucifera
Oeu005478.2 Olea europaea
Oeu039418.1 Olea europaea
Os02g0724600 Oryza sativa ssp. japonica
Os09g0551300 Oryza sativa ssp. japonica
Peaxi162Scf00057g02234 Petunia axillaris
PGR083G1781 Punica granatum
PGSC0003DMG400022346 Solanum tuberosum
Phvul.006G059200 Phaseolus vulgaris
Potri.001G369600 Populus trichocarpa
Pp3c1_15210 Physcomitrium patens
PRCOL_00002474 Prasinoderma coloniale
PRCOL_00002710 Prasinoderma coloniale
Prupe.8G036800 Prunus persica
Psat5g165320 Pisum sativum
PSO210G2179 Papaver somniferum
PSO210G5345 Papaver somniferum
PSO478G4279 Papaver somniferum
PSO832G4518 Papaver somniferum
QL08p003492 Quercus lobata
RcHm_v2.0_Chr4g0408681 Rosa chinensis
Rhsim06G0084600 Rhododendron simsii
Rhsim10G0056000 Rhododendron simsii
Sabra16G0242500 Salix brachista
SalBow1G0483 Salvia bowleyana
SalBow4G2449 Salvia bowleyana
SalBow5G1153 Salvia bowleyana
Sc03g0011610 Simmondsia chinensis
Sed0016663 Sechium edule
SEGI_06120 Sequoiadendron giganteum
SEGI_08867 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00379 Striga asiatica
SGA_v2.0_scaffold332G48953 Striga asiatica
SGA_v2.0_scaffold42G15966 Striga asiatica
SMO367G0604 Selaginella moellendorffii
Solyc02g079415.1 Solanum lycopersicum
Solyc07g052110.4 Solanum lycopersicum
Sopen02g024220 Solanum pennellii
Sopen07g025740 Solanum pennellii
Sopen09g020700 Solanum pennellii
Sp6g17770 Schrenkiella parvula
Sp7g24560 Schrenkiella parvula
TAR383G0304 Trochodendron aralioides
THA.LOC104817712 Tarenaya hassleriana
Thecc.07G009800 Theobroma cacao
Thhalv10012859m.g Eutrema salsugineum
Thhalv10024758m.g Eutrema salsugineum
TPR.G17957 Trifolium pratense
TWI38G2383 Tripterygium wilfordii
TWI39G0812 Tripterygium wilfordii
unitig_578.g16234 Utricularia gibba
vmacro11609 Vaccinium macrocarpon
vmacro15782 Vaccinium macrocarpon
VMungo0540G1920 Vigna mungo
Zm00001eb189070 Zea mays
Zm00001eb253180 Zea mays

User provided reference genes

Program Settings