Gene: AT4G26600

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G26600
  • Transcript Identifier AT4G26600.3
  • Gene Type Coding gene
  • Location Chr4 : 13419629-13423257 : positive

Gene Family Information

  • ID HOM05D003409
  • #Genes/#Species 201/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G26600.3
  • uniprot Q8VYM6

Descriptions

  • Description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
  • Computational description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Nop2p (InterPro:IPR011023); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 64231 Blast hits to 30815 proteins in 2915 species: Archae - 495; Bacteria - 29426; Metazoa - 12322; Fungi - 6487; Plants - 2396; Viruses - 589; Other Eukaryotes - 12516 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001510
IBA
IEA
Gene OntologyRNA methylation1
GO:0001510
IEA
InterProRNA methylation
GO:0006396
IEA
Gene OntologyRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0032259
IEA
GOA Databasemethylation
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0070475
IBA
Gene OntologyrRNA base methylation1
GO:0000470
IBA
Gene Ontologymaturation of LSU-rRNA1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008757
IEA
Gene OntologyS-adenosylmethionine-dependent methyltransferase activity
GO:0008757
IEA
InterProS-adenosylmethionine-dependent methyltransferase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0008168
IEA
InterPromethyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0009383
IBA
Gene OntologyrRNA (cytosine-C5-)-methyltransferase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IDA
IEA
GOA Databasenucleolus
GO:0005730
HDA
IBA
Gene Ontologynucleolus1 2
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type
IPR011023 Nop2p
IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR023267 RNA (C5-cytosine) methyltransferase
IPR023273 RNA (C5-cytosine) methyltransferase, NOP2
Mapman id Description
17.1.2.2.3.6 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.maturation factor (OLI2)