Gene: BcaB05g22238

General Information

Structural Information

Species Brassica carinata
Gene Identifier BcaB05g22238
Transcript Identifier BcaB05g22238
Gene Type Coding gene
Location ChrB05 : 6120352-6123833 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D003409
#Genes/#Species 201/98
Phylogenetic origin

ID ORTHO05D004015
#Genes/#Species 194/98
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006396	IEA	InterPro	RNA processing
GO:0001510	IEA	InterPro	RNA methylation
GO:0051301	ISO	PLAZA Integrative Orthology	cell division	AT5G55920
GO:0090069	ISO	PLAZA Integrative Orthology	regulation of ribosome biogenesis	AT5G55920
GO:0009965	ISO	PLAZA Integrative Orthology	leaf morphogenesis	AT5G55920
GO:0042127	ISO	PLAZA Integrative Orthology	regulation of cell population proliferation	AT5G55920
GO:0010015	ISO	PLAZA Integrative Orthology	root morphogenesis	AT5G55920

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003723	IEA	InterPro	RNA binding
GO:0008757	IEA	InterPro	S-adenosylmethionine-dependent methyltransferase activity
GO:0008168	IEA	InterPro	methyltransferase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT5G55920
GO:0005730	ISO	PLAZA Integrative Orthology	nucleolus	AT5G55920

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011023	Nop2p
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
IPR001678	SAM-dependent methyltransferase RsmB/NOP2-type
IPR031341	Ribosomal RNA small subunit methyltransferase F, N-terminal
IPR023267	RNA (C5-cytosine) methyltransferase
IPR023273	RNA (C5-cytosine) methyltransferase, NOP2

Mapman id	Description
17.1.2.2.3.6	Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.maturation factor (OLI2)