Gene: SGA_v2.0_scaffold1G00379

General Information

Structural Information

  • Species Striga asiatica
  • Gene Identifier SGA_v2.0_scaffold1G00379
  • Transcript Identifier SGA_v2.0_scaffold1T00379
  • Gene Type Coding gene
  • Location scaffold1 : 2869898-2877440 : negative

Gene Family Information

  • ID HOM05D003409
  • #Genes/#Species 201/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

  • product Ribosomal RNA small subunit methyltransferase F
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001510
IEA
InterProRNA methylation
GO:0006396
IEA
InterProRNA processing
GO:0051301
ISO
PLAZA Integrative Orthologycell division AT5G55920
GO:0090069
ISO
PLAZA Integrative Orthologyregulation of ribosome biogenesis AT5G55920
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT5G55920
GO:0042127
ISO
PLAZA Integrative Orthologyregulation of cell population proliferation AT5G55920
GO:0010015
ISO
PLAZA Integrative Orthologyroot morphogenesis AT5G55920

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008168
IEA
InterPromethyltransferase activity
GO:0003723
IEA
InterProRNA binding
GO:0008757
IEA
InterProS-adenosylmethionine-dependent methyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G55920
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G26600

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type
IPR008801 Rapid ALkalinization Factor
IPR023267 RNA (C5-cytosine) methyltransferase
IPR023273 RNA (C5-cytosine) methyltransferase, NOP2
IPR011023 Nop2p
IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal
Mapman id Description
11.10.2.4.1 Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.RALF/RALFL-peptide activity.RALF/RALFL-precursor polypeptide
17.1.2.2.3.6 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.maturation factor (OLI2)