Gene: FAN22G0308
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN22G0308
- Transcript Identifier FAN22G0308.1
- Gene Type Coding gene
- Location Fvb4-1 : 9007463-9014289 : negative
Gene Family Information
- ID HOM05D003409
- #Genes/#Species 201/98
- Phylogenetic origin
- ID ORTHO05D004015
- #Genes/#Species 194/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id augustus_masked-Fvb4-1-processed-gene-90.8.v1.0.a1
- pacid 50546082
Descriptions
- Description PF01189//PF05971//PF17125 - 16S rRNA methyltransferase RsmF (Nol1_Nop2_Fmu) // Protein of unknown function (DUF890) (Methyltransf_10) // N-terminal domain of 16S rRNA methyltransferase RsmF (Methyltr_RsmF_N)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0001510 | IEA | InterPro | RNA methylation | |
| GO:0051301 | ISO | PLAZA Integrative Orthology | cell division | AT5G55920 |
| GO:0090069 | ISO | PLAZA Integrative Orthology | regulation of ribosome biogenesis | AT5G55920 |
| GO:0009965 | ISO | PLAZA Integrative Orthology | leaf morphogenesis | AT5G55920 |
| GO:0042127 | ISO | PLAZA Integrative Orthology | regulation of cell population proliferation | AT5G55920 |
| GO:0010015 | ISO | PLAZA Integrative Orthology | root morphogenesis | AT5G55920 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008168 | IEA | InterPro | methyltransferase activity | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0008757 | IEA | InterPro | S-adenosylmethionine-dependent methyltransferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G55920 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT4G26600 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
| IPR010286 | METTL16/RlmF family |
| IPR011023 | Nop2p |
| IPR023273 | RNA (C5-cytosine) methyltransferase, NOP2 |
| IPR001678 | SAM-dependent methyltransferase RsmB/NOP2-type |
| IPR031341 | Ribosomal RNA small subunit methyltransferase F, N-terminal |
| IPR023267 | RNA (C5-cytosine) methyltransferase |
| Mapman id | Description |
|---|---|
| 17.1.2.2.3.6 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.maturation factor (OLI2) |
| 27.1.8 | Multi-process regulation.circadian clock system.circadian clock regulator (FIO1) |