Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p08160 Brassica napus
A01p35200 Brassica napus
A05p30110 Brassica napus
A08p19490 Brassica napus
Aa31LG2G20610 Aethionema arabicum
Aa31LG8G6270 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.110 Anthoceros agrestis
Actinidia00399 Actinidia chinensis
Actinidia01276 Actinidia chinensis
Actinidia02501 Actinidia chinensis
Actinidia34386 Actinidia chinensis
Ah.13g071300 Amaranthus hybridus
AL3G32920 Arabidopsis lyrata
AL7G22300 Arabidopsis lyrata
Aqoxy6G02831 Aquilegia oxysepala
Aqoxy7G02805 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.014EBR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.94M007 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FTH9FU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FWIG8T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FZD5NS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JKB27X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XG21R6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XV9VLA Arachis hypogaea
AT3G19510 Arabidopsis thaliana
AT3G19530 Arabidopsis thaliana
AT4G29940 Arabidopsis thaliana
ATR0626G154 Amborella trichopoda
ATR0661G143 Amborella trichopoda
Atru.chr5.2440 Acer truncatum
Atru.chr7.756 Acer truncatum
Atru.chr7.777 Acer truncatum
Atru.chr7.778 Acer truncatum
AUR62008106 Chenopodium quinoa
AUR62016216 Chenopodium quinoa
AUR62028683 Chenopodium quinoa
AUR62032761 Chenopodium quinoa
AUR62039272 Chenopodium quinoa
BcaB03g12627 Brassica carinata
BcaB04g20701 Brassica carinata
BcaB06g26011 Brassica carinata
BcaC01g01205 Brassica carinata
BcaC05g28469 Brassica carinata
BcaC09g48906 Brassica carinata
BcaC09g48908 Brassica carinata
BcaC09g48910 Brassica carinata
BcaC09g51766 Brassica carinata
BolC1t00904H Brassica oleracea
BolC1t04430H Brassica oleracea
BolC3t21210H Brassica oleracea
BolC5t33278H Brassica oleracea
BraA01t00764Z Brassica rapa
BraA01t03601Z Brassica rapa
BraA05t21851Z Brassica rapa
BraA08t33910Z Brassica rapa
C01p09130 Brassica napus
C01p44620 Brassica napus
C03p88990 Brassica napus
C05p45530 Brassica napus
CAN.G222.100 Capsicum annuum
CAN.G222.107 Capsicum annuum
CAN.G491.9 Capsicum annuum
CAN.G606.22 Capsicum annuum
CAN.G806.8 Capsicum annuum
CANSAT11G2326 Cannabis sativa
CANSAT25G1410 Cannabis sativa
CARHR094940 Cardamine hirsuta
CARHR237860 Cardamine hirsuta
Carub.0003s1932 Capsella rubella
Carub.0007s1070 Capsella rubella
Ca_02107_v3 Cicer arietinum L.
Ca_11056_v3 Cicer arietinum L.
CBR_g4411 Chara braunii
Cc02_g19450 Coffea canephora
Cc06_g20930 Coffea canephora
CDE02G1020 Ceratophyllum demersum
CDE02G2825 Ceratophyllum demersum
CDE06G0717 Ceratophyllum demersum
CDE06G1434 Ceratophyllum demersum
Cfa004608 Carpinus fangiana
Cfa013452 Carpinus fangiana
Cfa026195 Carpinus fangiana
Ciclev10007587m.g Citrus clementina
Ciclev10027725m.g Citrus clementina
CiPaw.06G168300 Carya illinoinensis
CiPaw.07G197000 Carya illinoinensis
CiPaw.08G032600 Carya illinoinensis
ClCG05G010380 Citrullus lanatus
ClCG06G013600 Citrullus lanatus
COL.COLO4_07060 Corchorus olitorius
COL.COLO4_32568 Corchorus olitorius
Cpa.g.c34101 Carica papaya
Cpa.g.sc95.11 Carica papaya
Cre12.g492200 Chlamydomonas reinhardtii
CsaV3_1G031870 Cucumis sativus L.
CsaV3_3G018090 Cucumis sativus L.
CsaV3_3G018100 Cucumis sativus L.
CSS0008847 Camellia sinensis var. sinensis
CSS0032057 Camellia sinensis var. sinensis
CSS0032468 Camellia sinensis var. sinensis
CSS0039068 Camellia sinensis var. sinensis
CSS0049178 Camellia sinensis var. sinensis
DCAR_001661 Daucus carota
DCAR_020149 Daucus carota
DCAR_029097 Daucus carota
Dinv15776 Davidia involucrata
Dinv25444 Davidia involucrata
Dinv41174 Davidia involucrata
Dinv42206 Davidia involucrata
Duzib052G0045 Durio zibethinus
Duzib132G1185 Durio zibethinus
ECA240G0303 Erigeron canadensis
ECA240G0470 Erigeron canadensis
EL10Ac3g05517 Beta vulgaris
EL10Ac5g10614 Beta vulgaris
Eucgr.C00114 Eucalyptus grandis
Eucgr.G01324 Eucalyptus grandis
FAN07G2529 Fragaria x ananassa
FAN12G0633 Fragaria x ananassa
FAN15G2022 Fragaria x ananassa
FAN17G2190 Fragaria x ananassa
FAN20G1217 Fragaria x ananassa
FAN22G1886 Fragaria x ananassa
FAN24G2621 Fragaria x ananassa
FAN27G3118 Fragaria x ananassa
FvH4_2g04760 Fragaria vesca
FvH4_4g07290 Fragaria vesca
Glyma.09G059700 Glycine max
Glyma.10G260400 Glycine max
Glyma.13G100500 Glycine max
Glyma.15G166200 Glycine max
Glyma.17G059400 Glycine max
Glyma.20G130800 Glycine max
Gohir.A03G185400 Gossypium hirsutum
Gohir.A04G119300 Gossypium hirsutum
Gohir.A05G002300 Gossypium hirsutum
Gohir.A12G020900 Gossypium hirsutum
Gohir.D02G206824 Gossypium hirsutum
Gohir.D04G160900 Gossypium hirsutum
Gohir.D05G002900 Gossypium hirsutum
Gohir.D12G021200 Gossypium hirsutum
Gorai.005G234300 Gossypium raimondii
Gorai.008G021500 Gossypium raimondii
Gorai.009G002500 Gossypium raimondii
Gorai.012G148900 Gossypium raimondii
GSVIVG01010860001 Vitis vinifera
GSVIVG01037412001 Vitis vinifera
GSVIVG01037894001 Vitis vinifera
HanXRQChr03g0065511 Helianthus annuus
HanXRQChr03g0068781 Helianthus annuus
HanXRQChr09g0251051 Helianthus annuus
Haze_10204 Corylus avellana
Haze_22018 Corylus avellana
Hma1.2p1_1023F.1_g248980 Hydrangea macrophylla
Hma1.2p1_1326F.1_g275820 Hydrangea macrophylla
HPP92_010285 Vanilla planifolia
HPP92_010399 Vanilla planifolia
HPP92_010400 Vanilla planifolia
HPP92_010401 Vanilla planifolia
HPP92_018450 Vanilla planifolia
Hund00160 Selenicereus undatus
Hund11981 Selenicereus undatus
Lalb_Chr02g0145201 Lupinus albus
Lalb_Chr11g0074731 Lupinus albus
Lalb_Chr13g0300011 Lupinus albus
Lj4g0002272 Lotus japonicus
Lj5A613G19 Lonicera japonica
Lj5A615T13 Lonicera japonica
Lj5C215T26 Lonicera japonica
Lj5g0017624 Lotus japonicus
Lj6g0002831 Lotus japonicus
Lj9A325T24 Lonicera japonica
Lsat_1_v5_gn_7_56301 Lactuca sativa
Lsat_1_v5_gn_7_78580 Lactuca sativa
Lsat_1_v5_gn_9_111961 Lactuca sativa
Manes.07G066300 Manihot esculenta
Manes.10G075000 Manihot esculenta
Manes.14G158300 Manihot esculenta
Mapoly0080s0093 Marchantia polymorpha
MBI16_g06971_MAGBIO Magnolia biondii
MCO12G193 Micromonas commoda
MD05G1092200 Malus domestica
MD10G1100500 Malus domestica
MD13G1241800 Malus domestica
MD16G1248700 Malus domestica
Medtr1g107015 Medicago truncatula
Medtr2g038000 Medicago truncatula
Medtr7g053103 Medicago truncatula
MELO3C017429.2 Cucumis melo
MELO3C019554.2 Cucumis melo
Migut.B00404 Erythranthe guttata
Migut.J00799 Erythranthe guttata
MSTRG.20196 Avicennia marina
Nitab4.5_0000054g0230 Nicotiana tabacum
Nitab4.5_0000617g0060 Nicotiana tabacum
Nitab4.5_0001480g0090 Nicotiana tabacum
Nitab4.5_0001810g0020 Nicotiana tabacum
Nitab4.5_0003699g0040 Nicotiana tabacum
Nitab4.5_0006344g0040 Nicotiana tabacum
Nitab4.5_0010000g0010 Nicotiana tabacum
Nitab4.5_0013791g0010 Nicotiana tabacum
Nn5g30462 Nelumbo nucifera
Nn8g40782 Nelumbo nucifera
Oeu008641.1 Olea europaea
Oeu013763.2 Olea europaea
Oeu014001.1 Olea europaea
Oeu018818.1 Olea europaea
Os02g0147800 Oryza sativa ssp. japonica
Os06g0229300 Oryza sativa ssp. japonica
Peaxi162Scf00016g02512 Petunia axillaris
Peaxi162Scf01038g00149 Petunia axillaris
PGR042G0497 Punica granatum
PGR142G2981 Punica granatum
PGSC0003DMG400025760 Solanum tuberosum
PGSC0003DMG400028740 Solanum tuberosum
Phvul.003G141400 Phaseolus vulgaris
Phvul.007G041800 Phaseolus vulgaris
Phvul.009G236200 Phaseolus vulgaris
Potri.001G298400 Populus trichocarpa
Potri.006G075500 Populus trichocarpa
Potri.009G093000 Populus trichocarpa
Potri.018G142400 Populus trichocarpa
Pp3c11_22100 Physcomitrium patens
Pp3c3_29290 Physcomitrium patens
Pp3c4_370 Physcomitrium patens
PRCOL_00003267 Prasinoderma coloniale
Prupe.1G075500 Prunus persica
Prupe.8G137800 Prunus persica
Psat1g144080 Pisum sativum
Psat3g175200 Pisum sativum
Psat6g216280 Pisum sativum
PSO063G3334 Papaver somniferum
PSO170G5665 Papaver somniferum
PSO541G4090 Papaver somniferum
PSO675G2637 Papaver somniferum
QL04p081495 Quercus lobata
QL04p081505 Quercus lobata
QL11p032628 Quercus lobata
RcHm_v2.0_Chr4g0399601 Rosa chinensis
RcHm_v2.0_Chr6g0254411 Rosa chinensis
Rhsim01G0117100 Rhododendron simsii
Rhsim11G0155600 Rhododendron simsii
RhsimUnG0126800 Rhododendron simsii
Sabra06G0056400 Salix brachista
Sabra09G0071600 Salix brachista
Sabra16G0187200 Salix brachista
Sabra18G0116300 Salix brachista
SalBow6G5521 Salvia bowleyana
Sc07g0008910 Simmondsia chinensis
Sc18g0005540 Simmondsia chinensis
Sed0011029 Sechium edule
Sed0012074 Sechium edule
Sed0013880 Sechium edule
Sed0028125 Sechium edule
SEGI_06647 Sequoiadendron giganteum
SEGI_10519 Sequoiadendron giganteum
SEGI_10952 Sequoiadendron giganteum
SEGI_14110 Sequoiadendron giganteum
SEGI_29396 Sequoiadendron giganteum
SEGI_38946 Sequoiadendron giganteum
SGA_v2.0_scaffold112G31576 Striga asiatica
SGA_v2.0_scaffold32G13031 Striga asiatica
SHI02862 Sapria himalayana
SHI02863 Sapria himalayana
SHI05259 Sapria himalayana
SMO358G0261 Selaginella moellendorffii
Solyc01g107410.3 Solanum lycopersicum
Solyc07g008730.2 Solanum lycopersicum
Sopen01g049650 Solanum pennellii
Sopen07g004650 Solanum pennellii
Sp3g17570 Schrenkiella parvula
Sp7g27750 Schrenkiella parvula
TAR376G0176 Trochodendron aralioides
TAR625G1463 Trochodendron aralioides
TAR628G0299 Trochodendron aralioides
TAR628G1370 Trochodendron aralioides
THA.LOC104814652 Tarenaya hassleriana
Thecc.02G111700 Theobroma cacao
Thecc.09G186000 Theobroma cacao
Thhalv10022305m.g Eutrema salsugineum
Thhalv10024489m.g Eutrema salsugineum
TPR.G27128 Trifolium pratense
TPR.G508 Trifolium pratense
TPR.G7568 Trifolium pratense
TPR.G887 Trifolium pratense
TWI34G1415 Tripterygium wilfordii
TWI79G1784 Tripterygium wilfordii
unitig_21.g20727 Utricularia gibba
unitig_8.g4049 Utricularia gibba
unitig_9.g29493 Utricularia gibba
vmacro01985 Vaccinium macrocarpon
vmacro20815 Vaccinium macrocarpon
VMungo0720G0584 Vigna mungo
VMungo1215G0644 Vigna mungo
VMungo1309G0834 Vigna mungo
Zm00001eb153100 Zea mays
Zm00001eb232240 Zea mays
Zm00001eb293840 Zea mays
Zm00001eb293860 Zea mays
Zm00001eb293870 Zea mays
Zm00001eb353320 Zea mays
Zm00001eb371020 Zea mays

User provided reference genes

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