Gene: AT4G29940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G29940
  • Transcript Identifier AT4G29940.2
  • Gene Type Coding gene
  • Location Chr4 : 14648346-14652710 : negative

Gene Family Information

  • ID HOM05D002228
  • #Genes/#Species 302/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G29940.2
  • symbol PRHA
  • full_name pathogenesis related homeodomain protein A
  • uniprot P48785

Descriptions

  • Description pathogenesis related homeodomain protein A
  • Computational description pathogenesis related homeodomain protein A (PRHA); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (TAIR:AT3G19510.1); Has 20197 Blast hits to 13808 proteins in 1056 species: Archae - 100; Bacteria - 2032; Metazoa - 7887; Fungi - 1709; Plants - 882; Viruses - 177; Other Eukaryotes - 7410 (source: NCBI BLink).
  • Computational description pathogenesis related homeodomain protein A (PRHA); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Homeodomain-like (InterPro:IPR009057), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (TAIR:AT3G19510.1).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045893
IDA
Gene Ontologypositive regulation of transcription, DNA-templated1
GO:0009733
IEP
Gene Ontologyresponse to auxin2
GO:0006325
IBA
Gene Ontologychromatin organization3
GO:0006355
IBA
Gene Ontologyregulation of transcription, DNA-templated3
GO:0006952
IEA
GOA Databasedefense response

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity4
GO:0043565
IDA
Gene Ontologysequence-specific DNA binding2
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0003682
IBA
Gene Ontologychromatin binding3
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IBA
Gene OntologyDNA binding3
GO:0003677
IEA
InterProDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009057 Homeobox-like domain superfamily
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001356 Homeobox domain
IPR011011 Zinc finger, FYVE/PHD-type
IPR001965 Zinc finger, PHD-type
IPR019787 Zinc finger, PHD-finger
Mapman id Description
15.5.3.8 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PHD)