Gene: Sopen07g004650

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen07g004650
  • Transcript Identifier Sopen07g004650.2
  • Gene Type Coding gene
  • Location Spenn-ch07 : 4142447-4151120 : negative

Gene Family Information

  • ID HOM05D002228
  • #Genes/#Species 302/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen07g004650.2

Descriptions

  • Description Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding. | pathogenesis related homeodomain protein A (PRHA) | CONTAINS InterPro DOMAIN/s: Homeobox , Zinc finger, PHD-type, conserved site , Homeodomain-like , Zinc finger, PHD-type , Zinc finger, FYVE/PHD-type , Zinc finger, PHD-finger , Homeodomain-related | BEST Arabidopsis thaliana protein match is: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain ., Homeobox protein HOX1A - Zea mays (Maize)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT4G29940
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT4G29940

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G29940
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT4G29940

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011011 Zinc finger, FYVE/PHD-type
IPR001356 Homeobox domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR019787 Zinc finger, PHD-finger
IPR001965 Zinc finger, PHD-type
IPR009057 Homeobox-like domain superfamily
Mapman id Description
15.5.3.8 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PHD)