Gene: Solyc07g008730.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g008730.2
  • Transcript Identifier Solyc07g008730.2.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 3669670-3678372 : negative

Gene Family Information

  • ID HOM05D002228
  • #Genes/#Species 302/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g008730.2.1
  • uniprot A0A3Q7H4G0
  • gene_id Solyc07g008730

Descriptions

  • Description Pathogenesis-related homeodomain protein (AHRD V3.3 *** A0A1U8H9N2_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IBA
GOA Databaseregulation of transcription, DNA-templated
GO:0006325
IBA
GOA Databasechromatin organization
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT4G29940
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT4G29940

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IBA
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003682
IBA
GOA Databasechromatin binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G29940
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT4G29940

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001356 Homeobox domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR019787 Zinc finger, PHD-finger
IPR001965 Zinc finger, PHD-type
IPR011011 Zinc finger, FYVE/PHD-type
IPR009057 Homeobox-like domain superfamily
Mapman id Description
15.5.3.8 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PHD)