Gene: Sopen01g049650

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g049650
  • Transcript Identifier Sopen01g049650.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 105624893-105630236 : positive

Gene Family Information

  • ID HOM05D002228
  • #Genes/#Species 302/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g049650.1

Descriptions

  • Description Homeobox protein HOX1A - Zea mays (Maize), Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains. | HAT3.1 | FUNCTIONS IN: sequence-specific DNA binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity | INVOLVED IN: positive regulation of transcription, regulation of transcription, DNA-dependent | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , Homeobox , Homeodomain-like , Zinc finger, FYVE/PHD-type , Zinc finger, PHD-finger , Homeodomain-related | BEST Arabidopsis thaliana protein match is: pathogenesis related homeodomain protein A
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT3G19510
GO:0009939
ISO
PLAZA Integrative Orthologypositive regulation of gibberellic acid mediated signaling pathway Os06g0229300
GO:1903507
ISO
PLAZA Integrative Orthologynegative regulation of nucleic acid-templated transcription Os06g0229300

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G19510
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT3G19510

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus Os06g0229300

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001356 Homeobox domain
IPR001965 Zinc finger, PHD-type
IPR009057 Homeobox-like domain superfamily
IPR011011 Zinc finger, FYVE/PHD-type
IPR019787 Zinc finger, PHD-finger
Mapman id Description
15.5.3.8 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PHD)