Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p20290 Brassica napus
A06p03300 Brassica napus
A08p03280 Brassica napus
Aa31LG10G3980 Aethionema arabicum
Aa31LG2G15270 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2591 Anthoceros agrestis
Actinidia08767 Actinidia chinensis
Actinidia20551 Actinidia chinensis
Actinidia24519 Actinidia chinensis
Actinidia27035 Actinidia chinensis
Actinidia27039 Actinidia chinensis
Ah.01g023480 Amaranthus hybridus
Ah.08g210750 Amaranthus hybridus
Ah.15g091020 Amaranthus hybridus
AL1G53150 Arabidopsis lyrata
AL1G57820 Arabidopsis lyrata
AL6G33900 Arabidopsis lyrata
Aqoxy2G01448 Aquilegia oxysepala
Aqoxy2G01449 Aquilegia oxysepala
Aqoxy6G01808 Aquilegia oxysepala
Aqoxy7G03361 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1BU1FJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QVU41V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X97WXI Arachis hypogaea
AT1G49930 Arabidopsis thaliana
AT1G50200 Arabidopsis thaliana
AT5G22800 Arabidopsis thaliana
ATR0019G036 Amborella trichopoda
ATR0326G040 Amborella trichopoda
ATR0712G016 Amborella trichopoda
Atru.chr2.1588 Acer truncatum
Atru.chr4.1286 Acer truncatum
Atru.chr5.3488 Acer truncatum
Atru.chr9.1432 Acer truncatum
AUR62009961 Chenopodium quinoa
AUR62012953 Chenopodium quinoa
AUR62015043 Chenopodium quinoa
AUR62017503 Chenopodium quinoa
AUR62028574 Chenopodium quinoa
AUR62030935 Chenopodium quinoa
AUR62033529 Chenopodium quinoa
BcaB04g17263 Brassica carinata
BcaB05g22693 Brassica carinata
BcaB07g33474 Brassica carinata
BcaC01g01218 Brassica carinata
BcaC01g03697 Brassica carinata
BcaC03g13917 Brassica carinata
BcaC05g27449 Brassica carinata
BcaC08g43202 Brassica carinata
BcaC08g43233 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p00390 Brassica napus
BolC2t07196H Brassica oleracea
BolC3t21267H Brassica oleracea
BolC5t32139H Brassica oleracea
BolC6t35631H Brassica oleracea
BolC6t35636H Brassica oleracea
BolC6t35692H Brassica oleracea
BraA02t05688Z Brassica rapa
BraA05t20939Z Brassica rapa
BraA06t23540Z Brassica rapa
BraA08t32361Z Brassica rapa
C02p11280 Brassica napus
C03p89530 Brassica napus
C05p34040 Brassica napus
C06p05090 Brassica napus
C06p05130 Brassica napus
C06p05260 Brassica napus
CAN.G1041.47 Capsicum annuum
CAN.G1041.49 Capsicum annuum
CAN.G1224.1 Capsicum annuum
CAN.G1235.26 Capsicum annuum
CAN.G2.9 Capsicum annuum
CAN.G364.2 Capsicum annuum
CAN.G578.12 Capsicum annuum
CAN.G732.34 Capsicum annuum
CAN.G8.48 Capsicum annuum
CAN.G899.11 Capsicum annuum
CANSAT25G0387 Cannabis sativa
CANSAT25G1750 Cannabis sativa
CARHR040290 Cardamine hirsuta
CARHR190770 Cardamine hirsuta
Carub.0001s3933 Capsella rubella
Carub.0006s2052 Capsella rubella
Ca_15279_v3 Cicer arietinum L.
Ca_19037_v3 Cicer arietinum L.
CBR_g34895 Chara braunii
Cc02_g00080 Coffea canephora
Cc02_g00090 Coffea canephora
Cc09_g10520 Coffea canephora
Cc11_g00060 Coffea canephora
Cc11_g00070 Coffea canephora
Cc11_g00080 Coffea canephora
CDE05G0454 Ceratophyllum demersum
CDE05G1460 Ceratophyllum demersum
CDE05G1766 Ceratophyllum demersum
CDE05G2317 Ceratophyllum demersum
Cfa005345 Carpinus fangiana
Cfa015943 Carpinus fangiana
Ciclev10030103m.g Citrus clementina
Ciclev10030624m.g Citrus clementina
CiPaw.05G091200 Carya illinoinensis
CiPaw.05G167200 Carya illinoinensis
ClCG02G010990 Citrullus lanatus
ClCG10G011880 Citrullus lanatus
COL.COLO4_03690 Corchorus olitorius
COL.COLO4_17969 Corchorus olitorius
Cpa.g.c28071.1 Carica papaya
Cpa.g.c29104.1 Carica papaya
Cpa.g.c33436.1 Carica papaya
Cpa.g.c38643 Carica papaya
Cpa.g.sc1758.1 Carica papaya
Cpa.g.sc20.161 Carica papaya
Cre02.g143200 Chlamydomonas reinhardtii
Cre08.g368900 Chlamydomonas reinhardtii
Cre14.g628400 Chlamydomonas reinhardtii
CsaV3_3G031480 Cucumis sativus L.
CsaV3_6G012710 Cucumis sativus L.
CSS0006826 Camellia sinensis var. sinensis
CSS0038936 Camellia sinensis var. sinensis
DCAR_007803 Daucus carota
DCAR_009885 Daucus carota
DCAR_020432 Daucus carota
DCAR_021492 Daucus carota
DCAR_022835 Daucus carota
DCAR_028291 Daucus carota
DCAR_028798 Daucus carota
DCAR_031909 Daucus carota
Dinv20822 Davidia involucrata
Dinv20830 Davidia involucrata
Dinv20834 Davidia involucrata
Dinv20837 Davidia involucrata
Dinv29120 Davidia involucrata
Dinv29121 Davidia involucrata
Dinv41898 Davidia involucrata
Duzib052G1218 Durio zibethinus
Duzib132G0368 Durio zibethinus
Duzib248G0227 Durio zibethinus
ECA233G4820 Erigeron canadensis
ECA236G4276 Erigeron canadensis
ECA238G3345 Erigeron canadensis
ECA246G0614 Erigeron canadensis
EL10Ac7g16954 Beta vulgaris
EL10Ac9g21289 Beta vulgaris
Eucgr.I01492 Eucalyptus grandis
Eucgr.J00856 Eucalyptus grandis
FAN05G3034 Fragaria x ananassa
FAN07G1183 Fragaria x ananassa
FAN12G0939 Fragaria x ananassa
FAN15G3397 Fragaria x ananassa
FAN17G1219 Fragaria x ananassa
FAN20G1974 Fragaria x ananassa
FAN22G1947 Fragaria x ananassa
FAN24G0316 Fragaria x ananassa
FAN24G3079 Fragaria x ananassa
FAN27G0881 Fragaria x ananassa
FvH4_2g16070 Fragaria vesca
FvH4_2g16080 Fragaria vesca
FvH4_4g36780 Fragaria vesca
Glyma.04G001600 Glycine max
Glyma.06G001100 Glycine max
Glyma.11G102100 Glycine max
Glyma.12G027800 Glycine max
Glyma.12G027850 Glycine max
Gohir.A03G164100 Gossypium hirsutum
Gohir.A03G208200 Gossypium hirsutum
Gohir.A12G134600 Gossypium hirsutum
Gohir.D02G187500 Gossypium hirsutum
Gohir.D02G229700 Gossypium hirsutum
Gohir.D12G138166 Gossypium hirsutum
Gohir.D12G138232 Gossypium hirsutum
Gorai.005G210000 Gossypium raimondii
Gorai.005G257400 Gossypium raimondii
Gorai.008G149700 Gossypium raimondii
GSVIVG01012030001 Vitis vinifera
GSVIVG01015738001 Vitis vinifera
GSVIVG01022996001 Vitis vinifera
GSVIVG01023918001 Vitis vinifera
GSVIVG01024313001 Vitis vinifera
GSVIVG01024320001 Vitis vinifera
GSVIVG01024566001 Vitis vinifera
HanXRQChr11g0337711 Helianthus annuus
HanXRQChr17g0559451 Helianthus annuus
Haze_00547 Corylus avellana
Haze_02022 Corylus avellana
Hma1.2p1_0003F.1_g003750 Hydrangea macrophylla
Hma1.2p1_0061F.1_g034040 Hydrangea macrophylla
Hma1.2p1_0080F.1_g042160 Hydrangea macrophylla
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla
Hma1.2p1_0589F.1_g184770 Hydrangea macrophylla
HPP92_007958 Vanilla planifolia
HPP92_010846 Vanilla planifolia
HPP92_010847 Vanilla planifolia
Hund19354 Selenicereus undatus
Hund20638 Selenicereus undatus
Lalb_Chr01g0001481 Lupinus albus
Lalb_Chr03g0024831 Lupinus albus
Lalb_Chr08g0246781 Lupinus albus
Lj1g0012910 Lotus japonicus
Lj3g0010854 Lotus japonicus
Lj3g0027168 Lotus japonicus
Lj8C169G8 Lonicera japonica
Lj9C403T6 Lonicera japonica
Lsat_1_v5_gn_7_108581 Lactuca sativa
Lsat_1_v5_gn_8_121800 Lactuca sativa
Manes.04G066500 Manihot esculenta
Manes.04G068300 Manihot esculenta
Manes.11G108600 Manihot esculenta
Mapoly0065s0015 Marchantia polymorpha
MBI02_g31764_MAGBIO Magnolia biondii
MBI12_g22457_MAGBIO Magnolia biondii
MBI15_g27187_MAGBIO Magnolia biondii
MCO03G183 Micromonas commoda
MCO11G803 Micromonas commoda
MD01G1001800 Malus domestica
MD05G1130000 Malus domestica
MD05G1130100 Malus domestica
MD05G1130200 Malus domestica
MD10G1133000 Malus domestica
MD10G1133100 Malus domestica
MD13G1007000 Malus domestica
MD16G1000800 Malus domestica
Medtr3g118360 Medicago truncatula
Medtr4g074640 Medicago truncatula
Medtr4g074670 Medicago truncatula
MELO3C000425.2 Cucumis melo
MELO3C000756.2 Cucumis melo
MELO3C012870.2 Cucumis melo
MELO3C013645.2 Cucumis melo
MELO3C024031.2 Cucumis melo
MELO3C027271.2 Cucumis melo
MELO3C027308.2 Cucumis melo
MELO3C028540.2 Cucumis melo
MELO3C029952.2 Cucumis melo
MELO3C032537.2 Cucumis melo
Migut.B00031 Erythranthe guttata
Migut.F00930 Erythranthe guttata
MSTRG.3 Avicennia marina
Nitab4.5_0000021g0810 Nicotiana tabacum
Nitab4.5_0002486g0050 Nicotiana tabacum
Nitab4.5_0003603g0030 Nicotiana tabacum
Nitab4.5_0009278g0020 Nicotiana tabacum
Nn2g12439 Nelumbo nucifera
Nn6g31779 Nelumbo nucifera
Nn8g39979 Nelumbo nucifera
Oeu025242.1 Olea europaea
Oeu027898.1 Olea europaea
Oeu028987.2 Olea europaea
Oeu051849.1 Olea europaea
Oeu051850.1 Olea europaea
Oeu051851.1 Olea europaea
Os06g0245800 Oryza sativa ssp. japonica
Os10g0182000 Oryza sativa ssp. japonica
Peaxi162Scf00133g00523 Petunia axillaris
Peaxi162Scf00362g00360 Petunia axillaris
Peaxi162Scf00516g00523 Petunia axillaris
PGR044G0467 Punica granatum
PGR142G1779 Punica granatum
PGSC0003DMG400026475 Solanum tuberosum
Phvul.007G142900 Phaseolus vulgaris
Phvul.009G116900 Phaseolus vulgaris
Phvul.011G031100 Phaseolus vulgaris
Potri.005G094300 Populus trichocarpa
Potri.007G070250 Populus trichocarpa
Potri.009G141300 Populus trichocarpa
Pp3c27_7320 Physcomitrium patens
Pp3c2_4380 Physcomitrium patens
Pp3c6_11150 Physcomitrium patens
Pp3s155_80 Physcomitrium patens
PRCOL_00001517 Prasinoderma coloniale
PRCOL_00002617 Prasinoderma coloniale
PRCOL_00004192 Prasinoderma coloniale
Prupe.1G345900 Prunus persica
Prupe.8G174300 Prunus persica
Psat5g000840 Pisum sativum
Psat5g000880 Pisum sativum
Psat7g173440 Pisum sativum
PSO063G5047 Papaver somniferum
PSO063G5328 Papaver somniferum
PSO111G0090 Papaver somniferum
PSO170G2372 Papaver somniferum
PSO782G0984 Papaver somniferum
PSO832G1241 Papaver somniferum
PSO832G2386 Papaver somniferum
PSO832G3175 Papaver somniferum
QL03p043876 Quercus lobata
QL11p055386 Quercus lobata
QL11p055697 Quercus lobata
RcHm_v2.0_Chr4g0446511 Rosa chinensis
RcHm_v2.0_Chr6g0279751 Rosa chinensis
RcHm_v2.0_Chr6g0279761 Rosa chinensis
Rhsim03G0224600 Rhododendron simsii
Rhsim05G0050000 Rhododendron simsii
Sabra04G0122300 Salix brachista
Sabra05G0078100 Salix brachista
Sabra09G0109800 Salix brachista
SalBow1G5513 Salvia bowleyana
SalBow2G2560 Salvia bowleyana
Sc06g0002420 Simmondsia chinensis
Sc12g0007070 Simmondsia chinensis
Sed0006167 Sechium edule
Sed0015099 Sechium edule
Sed0017650 Sechium edule
Sed0019949 Sechium edule
Sed0023453 Sechium edule
Sed0023914 Sechium edule
SEGI_04403 Sequoiadendron giganteum
SEGI_05741 Sequoiadendron giganteum
SEGI_06689 Sequoiadendron giganteum
SEGI_10768 Sequoiadendron giganteum
SEGI_12349 Sequoiadendron giganteum
SGA_v2.0_scaffold32G13329 Striga asiatica
SGA_v2.0_scaffold59G20731 Striga asiatica
SMO228G0067 Selaginella moellendorffii
SMO230G0008 Selaginella moellendorffii
SMO234G0071 Selaginella moellendorffii
SMO297G0009 Selaginella moellendorffii
Solyc01g111990.3 Solanum lycopersicum
Solyc03g097290.4 Solanum lycopersicum
Sopen01g054040 Solanum pennellii
Sopen03g028060 Solanum pennellii
Sp1g37050 Schrenkiella parvula
Sp1g37060 Schrenkiella parvula
Sp3g25110 Schrenkiella parvula
Sp6g22620 Schrenkiella parvula
TAR099G0004 Trochodendron aralioides
TAR185G0001 Trochodendron aralioides
TAR624G0546 Trochodendron aralioides
TAR626G0263 Trochodendron aralioides
TAR628G0285 Trochodendron aralioides
TAR629G2582 Trochodendron aralioides
THA.LOC104801893 Tarenaya hassleriana
THA.LOC104807386 Tarenaya hassleriana
THA.LOC104815233 Tarenaya hassleriana
Thecc.02G050000 Theobroma cacao
Thecc.02G161500 Theobroma cacao
Thhalv10011205m.g Eutrema salsugineum
Thhalv10012575m.g Eutrema salsugineum
TPR.G32335 Trifolium pratense
TPR.G38581 Trifolium pratense
TWI31G0479 Tripterygium wilfordii
TWI31G0974 Tripterygium wilfordii
TWI74G1422 Tripterygium wilfordii
TWI77G0632 Tripterygium wilfordii
unitig_21.g20851 Utricularia gibba
unitig_52.g17019 Utricularia gibba
unitig_62.g23836 Utricularia gibba
vmacro06369 Vaccinium macrocarpon
vmacro17273 Vaccinium macrocarpon
vmacro17274 Vaccinium macrocarpon
vmacro17275 Vaccinium macrocarpon
VMungo0331G1173 Vigna mungo
VMungo1127G1305 Vigna mungo
VMungo1309G1075 Vigna mungo
Zm00001eb033310 Zea mays
Zm00001eb033320 Zea mays
Zm00001eb371640 Zea mays
Zm00001eb409500 Zea mays

User provided reference genes

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