Gene: vmacro17274
General Information
Structural Information
- Species Vaccinium macrocarpon
- Gene Identifier vmacro17274
- Transcript Identifier vmacro17274-RA
- Gene Type Coding gene
- Location chr3_Vaccinium_macrocarpon_Stevens_v1 : 31365425-31369900 : positive
Gene Family Information
- ID HOM05D001816
- #Genes/#Species 361/99
- Phylogenetic origin
- ID ORTHO05D002001
- #Genes/#Species 328/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id vmacro17274_Vaccinium_macrocarpon_Stevens_v1
Descriptions
- Description Similar to POPTRDRAFT_821063: Alanine--tRNA ligase, chloroplastic/mitochondrial (Populus trichocarpa OX=3694)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006419 | IEA | InterPro | alanyl-tRNA aminoacylation | |
| GO:0043039 | IEA | InterPro | tRNA aminoacylation | |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT5G22800 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0004813 | IEA | InterPro | alanine-tRNA ligase activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0004812 | IEA | InterPro | aminoacyl-tRNA ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | InterPro | cytoplasm | |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT5G22800 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G22800 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT5G22800 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR018162 | Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily |
| IPR003156 | DHHA1 domain |
| IPR012947 | Threonyl/alanyl tRNA synthetase, SAD |
| IPR002318 | Alanine-tRNA ligase, class IIc |
| IPR009000 | Translation protein, beta-barrel domain superfamily |
| IPR018164 | Alanyl-tRNA synthetase, class IIc, N-terminal |
| IPR018163 | Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily |
| Mapman id | Description |
|---|---|
| 17.2.1 | Protein biosynthesis.aminoacyl-tRNA synthetase activities.alanine-tRNA ligase |