Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p38460 Brassica napus
A08p36960 Brassica napus
A09p29920 Brassica napus
A10p02840 Brassica napus
Aa31LG5G3770 Aethionema arabicum
Aa31LG8G2830 Aethionema arabicum
Aa31LG9G14620 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3959 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3187 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2051 Anthoceros agrestis
Actinidia08815 Actinidia chinensis
Actinidia08816 Actinidia chinensis
Actinidia30775 Actinidia chinensis
Actinidia37031 Actinidia chinensis
Actinidia39900 Actinidia chinensis
Ah.01g020870 Amaranthus hybridus
Ah.04g155840 Amaranthus hybridus
Ah.05g169940 Amaranthus hybridus
Ah.05g179350 Amaranthus hybridus
AL1G14010 Arabidopsis lyrata
AL3G28260 Arabidopsis lyrata
AL6G41630 Arabidopsis lyrata
Aqoxy5G00243 Aquilegia oxysepala
Aqoxy5G01902 Aquilegia oxysepala
Aqoxy6G00777 Aquilegia oxysepala
Aqoxy7G02054 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5JU8JU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FSP2M7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NTT2QB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P8UK8X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SC00KR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VS4P4P Arachis hypogaea
AT1G04400 Arabidopsis thaliana
AT3G15620 Arabidopsis thaliana
AT4G08920 Arabidopsis thaliana
ATR0048G066 Amborella trichopoda
ATR0505G001 Amborella trichopoda
ATR0782G069 Amborella trichopoda
ATR0815G018 Amborella trichopoda
Atru.chr1.3144 Acer truncatum
Atru.chr13.1183 Acer truncatum
Atru.chr4.2065 Acer truncatum
AUR62002133 Chenopodium quinoa
AUR62011574 Chenopodium quinoa
AUR62015577 Chenopodium quinoa
AUR62016390 Chenopodium quinoa
AUR62018922 Chenopodium quinoa
AUR62027766 Chenopodium quinoa
BcaB01g01365 Brassica carinata
BcaB03g13918 Brassica carinata
BcaB04g20913 Brassica carinata
BcaC04g20930 Brassica carinata
BcaC07g36910 Brassica carinata
BcaC09g48531 Brassica carinata
BolC1t04834H Brassica oleracea
BolC5t29040H Brassica oleracea
BolC8t46912H Brassica oleracea
BolC9t56612H Brassica oleracea
BraA01t03896Z Brassica rapa
BraA08t35596Z Brassica rapa
BraA09t38553Z Brassica rapa
BraA10t42551Z Brassica rapa
C01p48790 Brassica napus
C05p02590 Brassica napus
C08p01100 Brassica napus
C09p37790 Brassica napus
CAN.G101.4 Capsicum annuum
CAN.G2012.1 Capsicum annuum
CAN.G303.78 Capsicum annuum
CANSAT25G3454 Cannabis sativa
CANSAT56G2537 Cannabis sativa
CANSAT78G0380 Cannabis sativa
CARHR003740 Cardamine hirsuta
CARHR090710 Cardamine hirsuta
CARHR180300 Cardamine hirsuta
CARHR180310 Cardamine hirsuta
CARHR180320 Cardamine hirsuta
CARHR180330 Cardamine hirsuta
CARHR259940 Cardamine hirsuta
CARHR292070 Cardamine hirsuta
Carub.0001s0358 Capsella rubella
Carub.0003s1537 Capsella rubella
Carub.0006s2751 Capsella rubella
Ca_05277_v3 Cicer arietinum L.
Ca_07177_v3 Cicer arietinum L.
Ca_09868_v3 Cicer arietinum L.
Ca_11975_v3 Cicer arietinum L.
CBR_g6351 Chara braunii
Cc03_g05480 Coffea canephora
Cc04_g03940 Coffea canephora
Cc10_g07160 Coffea canephora
CDE03G0064 Ceratophyllum demersum
CDE03G0422 Ceratophyllum demersum
CDE04G0156 Ceratophyllum demersum
CDE04G1338 Ceratophyllum demersum
CDE05G1724 Ceratophyllum demersum
CDE05G2828 Ceratophyllum demersum
CDE05G3685 Ceratophyllum demersum
CDE06G0611 Ceratophyllum demersum
Cfa001626 Carpinus fangiana
Cfa002016 Carpinus fangiana
Cfa013639 Carpinus fangiana
Cfa022814 Carpinus fangiana
Cfa022953 Carpinus fangiana
Ciclev10000591m.g Citrus clementina
Ciclev10004525m.g Citrus clementina
Ciclev10025319m.g Citrus clementina
CiPaw.01G185200 Carya illinoinensis
CiPaw.02G112700 Carya illinoinensis
CiPaw.02G154200 Carya illinoinensis
CiPaw.07G179600 Carya illinoinensis
CiPaw.08G045400 Carya illinoinensis
ClCG06G006980 Citrullus lanatus
ClCG09G002600 Citrullus lanatus
ClCG09G002630 Citrullus lanatus
ClCG11G014090 Citrullus lanatus
COL.COLO4_12882 Corchorus olitorius
COL.COLO4_12883 Corchorus olitorius
COL.COLO4_15872 Corchorus olitorius
COL.COLO4_16390 Corchorus olitorius
Cpa.g.sc10.218 Carica papaya
Cpa.g.sc36.135 Carica papaya
Cpa.g.sc44.63 Carica papaya
Cre01.g030650 Chlamydomonas reinhardtii
Cre06.g278251 Chlamydomonas reinhardtii
Cre06.g295200 Chlamydomonas reinhardtii
CsaV3_3G047490 Cucumis sativus L.
CsaV3_7G032700 Cucumis sativus L.
CSS0017979 Camellia sinensis var. sinensis
CSS0018720 Camellia sinensis var. sinensis
CSS0033306 Camellia sinensis var. sinensis
CSS0039762 Camellia sinensis var. sinensis
DCAR_008737 Daucus carota
DCAR_024248 Daucus carota
DCAR_024253 Daucus carota
DCAR_027315 Daucus carota
Dinv13082 Davidia involucrata
Dinv14328 Davidia involucrata
Dinv14329 Davidia involucrata
Dinv27049 Davidia involucrata
Dinv29863 Davidia involucrata
Dinv30562 Davidia involucrata
Dinv44777 Davidia involucrata
Duzib041G0596 Durio zibethinus
Duzib052G0748 Durio zibethinus
Duzib093G0459 Durio zibethinus
Duzib151G0115 Durio zibethinus
Duzib212G0194 Durio zibethinus
Duzib235G0345 Durio zibethinus
ECA232G0963 Erigeron canadensis
ECA232G2422 Erigeron canadensis
ECA240G2764 Erigeron canadensis
EL10Ac1g01211 Beta vulgaris
EL10Ac3g05010 Beta vulgaris
EL10Ac9g21949 Beta vulgaris
Eucgr.F00326 Eucalyptus grandis
Eucgr.H00159 Eucalyptus grandis
Eucgr.J03037 Eucalyptus grandis
FAN04G1139 Fragaria x ananassa
FAN05G1517 Fragaria x ananassa
FAN08G1600 Fragaria x ananassa
FAN12G1647 Fragaria x ananassa
FAN13G0847 Fragaria x ananassa
FAN14G3546 Fragaria x ananassa
FAN17G0868 Fragaria x ananassa
FAN17G1205 Fragaria x ananassa
FAN18G1941 Fragaria x ananassa
FAN22G2410 Fragaria x ananassa
FvH4_4g03570 Fragaria vesca
FvH4_4g06200 Fragaria vesca
FvH4_4g06203 Fragaria vesca
FvH4_5g37290 Fragaria vesca
FvH4_6g30470 Fragaria vesca
Glyma.02G005700 Glycine max
Glyma.04G101500 Glycine max
Glyma.06G103200 Glycine max
Glyma.07G032850 Glycine max
Glyma.08G209600 Glycine max
Glyma.10G180600 Glycine max
Glyma.13G089200 Glycine max
Glyma.14G174200 Glycine max
Glyma.20G209900 Glycine max
Gohir.A02G039200 Gossypium hirsutum
Gohir.A05G226100 Gossypium hirsutum
Gohir.A05G266800 Gossypium hirsutum
Gohir.A06G119300 Gossypium hirsutum
Gohir.A09G230000 Gossypium hirsutum
Gohir.D02G045300 Gossypium hirsutum
Gohir.D05G228900 Gossypium hirsutum
Gohir.D05G268400 Gossypium hirsutum
Gohir.D06G123500 Gossypium hirsutum
Gohir.D09G231000 Gossypium hirsutum
Gorai.005G050000 Gossypium raimondii
Gorai.006G253700 Gossypium raimondii
Gorai.009G236700 Gossypium raimondii
Gorai.009G280900 Gossypium raimondii
Gorai.010G143600 Gossypium raimondii
GSVIVG01009033001 Vitis vinifera
GSVIVG01017239001 Vitis vinifera
GSVIVG01027806001 Vitis vinifera
HanXRQChr03g0091401 Helianthus annuus
HanXRQChr04g0113061 Helianthus annuus
HanXRQChr05g0145441 Helianthus annuus
HanXRQChr09g0274821 Helianthus annuus
HanXRQChr09g0274891 Helianthus annuus
Haze_11374 Corylus avellana
Haze_16505 Corylus avellana
Haze_18102 Corylus avellana
Haze_22273 Corylus avellana
Hma1.2p1_0267F.1_g107300 Hydrangea macrophylla
HPP92_008604 Vanilla planifolia
HPP92_008605 Vanilla planifolia
HPP92_008657 Vanilla planifolia
HPP92_011220 Vanilla planifolia
HPP92_011221 Vanilla planifolia
HPP92_011227 Vanilla planifolia
HPP92_027683 Vanilla planifolia
HPP92_027684 Vanilla planifolia
Hund00555 Selenicereus undatus
Hund11886 Selenicereus undatus
Hund16903 Selenicereus undatus
Lalb_Chr04g0253141 Lupinus albus
Lalb_Chr10g0102401 Lupinus albus
Lalb_Chr11g0065411 Lupinus albus
Lalb_Chr21g0312011 Lupinus albus
Lj1g0010282 Lotus japonicus
Lj1g0025181 Lotus japonicus
Lj3A695T40 Lonicera japonica
Lj3g0019131 Lotus japonicus
Lj4A102T61 Lonicera japonica
Lj4A724T54 Lonicera japonica
Lj5g0000267 Lotus japonicus
Lj6g0003915 Lotus japonicus
Lsat_1_v5_gn_1_3881 Lactuca sativa
Lsat_1_v5_gn_3_120400 Lactuca sativa
Lsat_1_v5_gn_4_104581 Lactuca sativa
Lsat_1_v5_gn_4_149701 Lactuca sativa
Lsat_1_v5_gn_4_21701 Lactuca sativa
Lsat_1_v5_gn_6_103780 Lactuca sativa
Lsat_1_v5_gn_7_67581 Lactuca sativa
Lsat_1_v5_gn_8_23241 Lactuca sativa
Lsat_1_v5_gn_9_41700 Lactuca sativa
Manes.02G152400 Manihot esculenta
Manes.04G117500 Manihot esculenta
Manes.15G040500 Manihot esculenta
Manes.18G067300 Manihot esculenta
Mapoly0049s0130 Marchantia polymorpha
Mapoly0094s0027 Marchantia polymorpha
Mapoly0095s0027 Marchantia polymorpha
Mapoly0163s0002 Marchantia polymorpha
MBI01_g07130_MAGBIO Magnolia biondii
MBI01_g24081_MAGBIO Magnolia biondii
MBI05_g39036_MAGBIO Magnolia biondii
MBI10_g44355_MAGBIO Magnolia biondii
MBI10_g46254_MAGBIO Magnolia biondii
MCO04G063 Micromonas commoda
MCO14G187 Micromonas commoda
MCO15G460 Micromonas commoda
MD00G1201600 Malus domestica
MD13G1213600 Malus domestica
MD15G1369900 Malus domestica
MD16G1217700 Malus domestica
MD16G1217800 Malus domestica
MD17G1203600 Malus domestica
Medtr1g043190 Medicago truncatula
Medtr1g076190 Medicago truncatula
Medtr4g011370 Medicago truncatula
Medtr5g063920 Medicago truncatula
MELO3C003575.2 Cucumis melo
MELO3C018340.2 Cucumis melo
MELO3C022995.2 Cucumis melo
MELO3C023394.2 Cucumis melo
Migut.G00523 Erythranthe guttata
Migut.I00806 Erythranthe guttata
Migut.N02894 Erythranthe guttata
MSTRG.22155 Avicennia marina
MSTRG.24456 Avicennia marina
MSTRG.4135 Avicennia marina
MSTRG.9894 Avicennia marina
Nitab4.5_0000044g0250 Nicotiana tabacum
Nitab4.5_0000232g0110 Nicotiana tabacum
Nitab4.5_0000421g0020 Nicotiana tabacum
Nitab4.5_0001005g0100 Nicotiana tabacum
Nitab4.5_0003011g0090 Nicotiana tabacum
Nitab4.5_0003380g0010 Nicotiana tabacum
Nitab4.5_0006854g0010 Nicotiana tabacum
Nitab4.5_0007455g0010 Nicotiana tabacum
Nn1g02753 Nelumbo nucifera
Nn1g05366 Nelumbo nucifera
Nn3g19643 Nelumbo nucifera
Nn5g30092 Nelumbo nucifera
Nn8g39367 Nelumbo nucifera
Oeu002709.1 Olea europaea
Oeu002948.1 Olea europaea
Oeu015234.1 Olea europaea
Oeu053220.1 Olea europaea
Oeu057377.2 Olea europaea
Os02g0204400 Oryza sativa ssp. japonica
Os02g0573200 Oryza sativa ssp. japonica
Os02g0625000 Oryza sativa ssp. japonica
Os04g0452100 Oryza sativa ssp. japonica
Peaxi162Scf00034g01311 Petunia axillaris
Peaxi162Scf00392g00518 Petunia axillaris
Peaxi162Scf00543g00216 Petunia axillaris
PGR031G1163 Punica granatum
PGR031G1957 Punica granatum
PGR042G3104 Punica granatum
PGSC0003DMG400008545 Solanum tuberosum
PGSC0003DMG400017172 Solanum tuberosum
PGSC0003DMG400028620 Solanum tuberosum
Phvul.007G108900 Phaseolus vulgaris
Phvul.007G273300 Phaseolus vulgaris
Phvul.008G173700 Phaseolus vulgaris
Phvul.009G031300 Phaseolus vulgaris
Phvul.010G153200 Phaseolus vulgaris
Potri.002G096900 Populus trichocarpa
Potri.003G060000 Populus trichocarpa
Potri.005G164700 Populus trichocarpa
Potri.008G166566 Populus trichocarpa
Potri.008G166632 Populus trichocarpa
Potri.010G071200 Populus trichocarpa
Pp3c22_7890 Physcomitrium patens
Pp3c7_20480 Physcomitrium patens
Pp3c7_20520 Physcomitrium patens
PRCOL_00000313 Prasinoderma coloniale
PRCOL_00004357 Prasinoderma coloniale
PRCOL_00005765 Prasinoderma coloniale
PRCOL_00005772 Prasinoderma coloniale
PRCOL_00006250 Prasinoderma coloniale
Prupe.1G038900 Prunus persica
Prupe.1G517600 Prunus persica
Prupe.3G078500 Prunus persica
Psat2g072040 Pisum sativum
Psat6g105320 Pisum sativum
Psat6g115280 Pisum sativum
Psat7g254920 Pisum sativum
PSO170G4564 Papaver somniferum
PSO210G2272 Papaver somniferum
PSO210G4129 Papaver somniferum
PSO447G0016 Papaver somniferum
PSO455G0239 Papaver somniferum
PSO832G0396 Papaver somniferum
QL05p034025 Quercus lobata
QL06p017842 Quercus lobata
QL12p036839 Quercus lobata
RcHm_v2.0_Chr2g0136821 Rosa chinensis
RcHm_v2.0_Chr4g0392941 Rosa chinensis
RcHm_v2.0_Chr7g0238851 Rosa chinensis
Rhsim02G0037100 Rhododendron simsii
Rhsim07G0202900 Rhododendron simsii
Rhsim12G0193900 Rhododendron simsii
Sabra02G0076200 Salix brachista
Sabra03G0034400 Salix brachista
Sabra05G0124200 Salix brachista
Sabra08G0127100 Salix brachista
Sabra10G0036400 Salix brachista
SalBow2G0538 Salvia bowleyana
SalBow2G1871 Salvia bowleyana
SalBow2G2083 Salvia bowleyana
SalBow2G2310 Salvia bowleyana
SalBow2G3379 Salvia bowleyana
Sc01g0000470 Simmondsia chinensis
Sc10g0005650 Simmondsia chinensis
Sc19g0003660 Simmondsia chinensis
Sed0005567 Sechium edule
Sed0021244 Sechium edule
Sed0021672 Sechium edule
SEGI_04600 Sequoiadendron giganteum
SEGI_16465 Sequoiadendron giganteum
SEGI_21275 Sequoiadendron giganteum
SEGI_23746 Sequoiadendron giganteum
SEGI_28997 Sequoiadendron giganteum
SEGI_33091 Sequoiadendron giganteum
SEGI_39596 Sequoiadendron giganteum
SEGI_39830 Sequoiadendron giganteum
SGA_v2.0_scaffold28G11918 Striga asiatica
SGA_v2.0_scaffold5G02656 Striga asiatica
SGA_v2.0_scaffold67G22751 Striga asiatica
SMO116G0377 Selaginella moellendorffii
SMO169G0266 Selaginella moellendorffii
SMO356G0308 Selaginella moellendorffii
SMO367G0488 Selaginella moellendorffii
Solyc04g074180.4 Solanum lycopersicum
Solyc09g090100.3 Solanum lycopersicum
Solyc12g042910.2 Solanum lycopersicum
Solyc12g057040.2 Solanum lycopersicum
Sopen04g029360 Solanum pennellii
Sopen09g033010 Solanum pennellii
Sopen12g022090 Solanum pennellii
Sopen12g029700 Solanum pennellii
Sp1g03220 Schrenkiella parvula
Sp2g08150 Schrenkiella parvula
Sp3g13920 Schrenkiella parvula
Sp6g08810 Schrenkiella parvula
TAR376G0873 Trochodendron aralioides
TAR381G1263 Trochodendron aralioides
TAR383G0401 Trochodendron aralioides
TAR628G0761 Trochodendron aralioides
TAR628G1533 Trochodendron aralioides
TAR633G0551 Trochodendron aralioides
TAR636G1063 Trochodendron aralioides
THA.LOC104810791 Tarenaya hassleriana
THA.LOC104813117 Tarenaya hassleriana
THA.LOC104816737 Tarenaya hassleriana
THA.LOC104818045 Tarenaya hassleriana
THA.LOC104826084 Tarenaya hassleriana
Thecc.04G254700 Theobroma cacao
Thecc.06G074500 Theobroma cacao
Thecc.08G106300 Theobroma cacao
Thhalv10003169m.g Eutrema salsugineum
Thhalv10007081m.g Eutrema salsugineum
Thhalv10020425m.g Eutrema salsugineum
TPR.G14903 Trifolium pratense
TPR.G22889 Trifolium pratense
TPR.G23768 Trifolium pratense
TPR.G25169 Trifolium pratense
TPR.G38677 Trifolium pratense
TWI12G0405 Tripterygium wilfordii
TWI12G0842 Tripterygium wilfordii
TWI36G0879 Tripterygium wilfordii
unitig_22.g5823 Utricularia gibba
unitig_747.g21684 Utricularia gibba
vmacro04744 Vaccinium macrocarpon
vmacro15439 Vaccinium macrocarpon
vmacro16924 Vaccinium macrocarpon
vmacro21266 Vaccinium macrocarpon
VMungo0331G1721 Vigna mungo
VMungo0647G1228 Vigna mungo
VMungo0720G2788 Vigna mungo
VMungo1309G2627 Vigna mungo
Zm00001eb010780 Zea mays
Zm00001eb081200 Zea mays
Zm00001eb182820 Zea mays
Zm00001eb230340 Zea mays
Zm00001eb230350 Zea mays
Zm00001eb233400 Zea mays
Zm00001eb235370 Zea mays
Zm00001eb244770 Zea mays
Zm00001eb382070 Zea mays

User provided reference genes

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