Gene: AT1G04400
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G04400
- Transcript Identifier AT1G04400.1
- Gene Type Coding gene
- Location Chr1 : 1185719-1187901 : negative
Gene Family Information
- ID HOM05D001432
- #Genes/#Species 439/99
- Phylogenetic origin
- ID ORTHO05D002371
- #Genes/#Species 294/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G04400.1
- symbol CRY2
- Alias AT-PHH1,ATCRY2,FHA,PHH1
- uniprot G4WTW5
Descriptions
- Description cryptochrome 2
- Computational description cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
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Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009785 | IEA | GOA Database | blue light signaling pathway | |
| GO:0009785 | IGI | Gene Ontology | blue light signaling pathway | 1 |
| GO:0009785 | IEA | InterPro | blue light signaling pathway | |
| GO:0009416 | IMP, IEP | Gene Ontology | response to light stimulus | 2 3 |
| GO:0048574 | IMP | Gene Ontology | long-day photoperiodism, flowering | 3 |
| GO:0009637 | IDA, IMP, IEP | Gene Ontology | response to blue light | 4 5 6 |
| GO:2000028 | IDA | Gene Ontology | regulation of photoperiodism, flowering | 7 |
| GO:0042752 | IMP | Gene Ontology | regulation of circadian rhythm | 8 |
| GO:1902347 | IMP | Gene Ontology | response to strigolactone | 9 |
| GO:0072387 | IMP | Gene Ontology | flavin adenine dinucleotide metabolic process | 10 |
| GO:2000379 | IDA | Gene Ontology | positive regulation of reactive oxygen species metabolic process | 11 |
| GO:0010244 | IMP, IEP | Gene Ontology | response to low fluence blue light stimulus by blue low-fluence system | 12 13 |
| GO:0006325 | IMP | Gene Ontology | chromatin organization | 2 |
| GO:0009638 | IMP, IGI | Gene Ontology | phototropism | 4 14 |
| GO:0043153 | IBA | Gene Ontology | entrainment of circadian clock by photoperiod | 15 |
| GO:0032922 | IBA | Gene Ontology | circadian regulation of gene expression | 15 |
| GO:0018298 | IEA | GOA Database | protein-chromophore linkage | |
| GO:0007623 | IEP | Gene Ontology | circadian rhythm | 16 |
| GO:0009646 | IEP | Gene Ontology | response to absence of light | 16 |
| GO:0009414 | IGI | Gene Ontology | response to water deprivation | 17 |
| GO:0010118 | IGI | Gene Ontology | stomatal movement | 17 |
| GO:0046777 | IDA | Gene Ontology | protein autophosphorylation | 18 |
| GO:0009909 | IDA | Gene Ontology | regulation of flower development | 19 |
| GO:0009911 | IMP | Gene Ontology | positive regulation of flower development | 19 |
| GO:0006338 | IMP | Gene Ontology | chromatin remodeling | 20 |
| GO:0010617 | IMP | Gene Ontology | circadian regulation of calcium ion oscillation | 21 |
| GO:0010075 | IGI | Gene Ontology | regulation of meristem growth | 22 |
| GO:1901371 | IMP | Gene Ontology | regulation of leaf morphogenesis | 12 |
| GO:0051607 | IMP | Gene Ontology | defense response to virus | 5 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IBA | Gene Ontology | DNA binding | 15 |
| GO:0071949 | IDA IBA | Gene Ontology | FAD binding | 15 18 |
| GO:0009882 | IEA | GOA Database | blue light photoreceptor activity | |
| GO:0009882 | ISS | Gene Ontology | blue light photoreceptor activity | 23 |
| GO:0009882 | IEA | InterPro | blue light photoreceptor activity | |
| GO:0005524 | IDA | Gene Ontology | ATP binding | 18 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 24 |
| GO:0042802 | IPI | Gene Ontology | identical protein binding | 25 |
| GO:0042803 | IPI | Gene Ontology | protein homodimerization activity | 25 |
| GO:0016301 | IDA | Gene Ontology | kinase activity | 18 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016604 | IDA, IMP | Gene Ontology | nuclear body | 6 26 |
| GO:0005737 | IDA IBA | Gene Ontology | cytoplasm | 11 15 |
| GO:0005634 | IDA ISM, IBA | Gene Ontology | nucleus | 15 27 |
| GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 28 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002081 | Cryptochrome/DNA photolyase class 1 |
| IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
| IPR006050 | DNA photolyase, N-terminal |
| IPR036155 | Cryptochrome/photolyase, N-terminal domain superfamily |
| IPR036134 | Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily |
| IPR014134 | Cryptochrome, plant |
| IPR005101 | Cryptochrome/DNA photolyase, FAD-binding domain |
| Mapman id | Description |
|---|---|
| 26.1.2.1.1 | External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.cryptochrome photoreceptor (CRY) |