Gene: Solyc12g042910.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc12g042910.2
- Transcript Identifier Solyc12g042910.2.1
- Gene Type Coding gene
- Location SL4.0ch12 : 57988514-57993764 : negative
Gene Family Information
- ID HOM05D001432
- #Genes/#Species 439/99
- Phylogenetic origin
- ID ORTHO05D009001
- #Genes/#Species 111/92
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc12g042910.2.1
- uniprot A0A3Q7JAG2
- gene_id Solyc12g042910
Descriptions
- Description DNA photolyase (AHRD V3.3 *** A0A200PQM0_9MAGN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043153 | IBA | GOA Database | entrainment of circadian clock by photoperiod | |
| GO:0032922 | IBA | GOA Database | circadian regulation of gene expression | |
| GO:0009411 | ISO | PLAZA Integrative Orthology | response to UV | AT3G15620 |
| GO:0009785 | ISO | PLAZA Homology (enrichment) | blue light signaling pathway | HOM05D001432 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0071949 | IBA | GOA Database | FAD binding | |
| GO:0003677 | IBA | GOA Database | DNA binding | |
| GO:0009882 | ISO | PLAZA Homology (enrichment) | blue light photoreceptor activity | HOM05D001432 |
| GO:0003914 | ISO | PLAZA Integrative Orthology | DNA (6-4) photolyase activity | AT3G15620 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IBA | GOA Database | cytoplasm | |
| GO:0005634 | IBA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005101 | Cryptochrome/DNA photolyase, FAD-binding domain |
| IPR036134 | Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily |
| IPR002081 | Cryptochrome/DNA photolyase class 1 |
| IPR036155 | Cryptochrome/photolyase, N-terminal domain superfamily |
| IPR006050 | DNA photolyase, N-terminal |
| IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
| Mapman id | Description |
|---|---|
| 14.9.1 | DNA damage response.photoreactivation.6-4-type photolyase (UVR3) |