Gene: PGSC0003DMG400028620

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400028620
  • Transcript Identifier PGSC0003DMT400073684
  • Gene Type Coding gene
  • Location ST4.03ch12 : 49878472-49883805 : negative

Gene Family Information

  • ID HOM05D001432
  • #Genes/#Species 439/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37446266
  • id PGSC0003DMG400028620.v4.03
  • uniprot M1CSG5

Descriptions

  • Description DNA photolyase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043153
IBA
GOA Databaseentrainment of circadian clock by photoperiod
GO:0032922
IBA
GOA Databasecircadian regulation of gene expression
GO:0009411
ISO
PLAZA Integrative Orthologyresponse to UV AT3G15620
GO:0009785
ISO
PLAZA Homology (enrichment)blue light signaling pathway HOM05D001432

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071949
IBA
GOA DatabaseFAD binding
GO:0003677
IBA
GOA DatabaseDNA binding
GO:0009882
ISO
PLAZA Homology (enrichment)blue light photoreceptor activity HOM05D001432
GO:0003914
ISO
PLAZA Integrative OrthologyDNA (6-4) photolyase activity AT3G15620

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006050 DNA photolyase, N-terminal
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
IPR002081 Cryptochrome/DNA photolyase class 1
IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily
IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily
IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain
Mapman id Description
14.9.1 DNA damage response.photoreactivation.6-4-type photolyase (UVR3)